Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_F17
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 310 9e-86
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 235 4e-63
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 125 5e-30
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 96 3e-21
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 46 6e-06
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 44 3e-05
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 40 3e-04
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 38 0.001
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 38 0.001
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 36 0.004
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 35 0.009
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 34 0.016
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 34 0.021
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 31 0.11
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 31 0.15
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 30 0.25
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 30 0.25
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 29 0.77
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 28 1.0
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 27 1.8
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 26 4.1
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 26 4.1
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 5.5
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 5.5
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 5.5
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 25 7.2
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 25 9.5
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 25 9.5
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 25 9.5
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 25 9.5
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 310 bits (762), Expect = 9e-86
Identities = 145/173 (83%), Positives = 155/173 (89%)
Frame = +2
Query: 134 GICLRIYLNGLFGKKEMXILMVGLDAAGKTTILYKLKLXEIVTTIPTIGFNVETVXYKNI 313
G+ + LFGK+EM ILMVGLDAAGKTTILYKLKL EIVTTIPTIGFNVETV Y+NI
Sbjct: 2 GLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNI 61
Query: 314 SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVXXSNDRERIGEAREXLMRMLSEDELRDAVL 493
SFTVWDVGGQDKIRPLWRHYFQNTQG+IFV SNDRERI EA E L RML+EDELRDA+L
Sbjct: 62 SFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALL 121
Query: 494 LIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYXGLDWLS 652
L+FANKQDLPNAMNAAEITDKLGLHSLR+R WYIQATCATSGDGLY GL+WLS
Sbjct: 122 LVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLS 174
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 235 bits (575), Expect = 4e-63
Identities = 110/163 (67%), Positives = 128/163 (78%)
Frame = +2
Query: 164 LFGKKEMXILMVGLDAAGKTTILYKLKLXEIVTTIPTIGFNVETVXYKNISFTVWDVGGQ 343
LF KEM ILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F VWDVGGQ
Sbjct: 16 LFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQ 75
Query: 344 DKIRPLWRHYFQNTQGLIFVXXSNDRERIGEAREXLMRMLSEDELRDAVLLIFANKQDLP 523
DKIRPLWRHYF T+GLIFV S D RI EAR+ L R++S+ E+RD +LL+ ANKQDLP
Sbjct: 76 DKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLP 135
Query: 524 NAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYXGLDWLS 652
A++ A+ITD L L L++R W +Q TCA +GDGL GL WLS
Sbjct: 136 GALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLS 178
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 125 bits (302), Expect = 5e-30
Identities = 56/160 (35%), Positives = 98/160 (61%)
Frame = +2
Query: 173 KKEMXILMVGLDAAGKTTILYKLKLXEIVTTIPTIGFNVETVXYKNISFTVWDVGGQDKI 352
++E+ +L++GLD AGKTTIL L ++ PT GF + T+ + + FT+WD+GGQ +
Sbjct: 14 EREVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKTL 73
Query: 353 RPLWRHYFQNTQGLIFVXXSNDRERIGEAREXLMRMLSEDELRDAVLLIFANKQDLPNAM 532
R W++YF++T+ +I+V S D R+ E R L +L E++L +L+ ANK D+ A+
Sbjct: 74 RNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGAL 133
Query: 533 NAAEITDKLGLHSLRNRNWYIQATCATSGDGLYXGLDWLS 652
++ EI+ L + ++ +W I + A +G + + WL+
Sbjct: 134 SSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLA 173
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 96.3 bits (229), Expect = 3e-21
Identities = 48/131 (36%), Positives = 73/131 (55%)
Frame = +2
Query: 176 KEMXILMVGLDAAGKTTILYKLKLXEIVTTIPTIGFNVETVXYKNISFTVWDVGGQDKIR 355
K +L +GLD AGKTT+L+ LK + PT+ E + N+ FT +D+GG + R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 356 PLWRHYFQNTQGLIFVXXSNDRERIGEAREXLMRMLSEDELRDAVLLIFANKQDLPNAMN 535
LWR YF G++++ D ER+ E++ L +L+ +EL LI NK D P A++
Sbjct: 79 RLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAIS 138
Query: 536 AAEITDKLGLH 568
E+ LGL+
Sbjct: 139 EDELKAALGLY 149
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 45.6 bits (103), Expect = 6e-06
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Frame = +2
Query: 188 ILMVGLDAAGKTTILYKLKLXEIVTT-IPTIG--FNVETVXY--KNISFTVWDVGGQDKI 352
+L++G GK+ +L + + I TIG F + T K + +WD GQ++
Sbjct: 11 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERF 70
Query: 353 RPLWRHYFQNTQGLIFVXXSNDRERIGEAREXLMRMLSEDELRDAVLLIFANKQDL 520
R + Y++ G+I V D++ ++ L + + L+ NK D+
Sbjct: 71 RTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE-IDRYAVEGVNRLLVGNKSDM 125
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 43.6 bits (98), Expect = 3e-05
Identities = 25/115 (21%), Positives = 50/115 (43%), Gaps = 5/115 (4%)
Frame = +2
Query: 188 ILMVGLDAAGKTTILYKLKLXEIVTT-IPTIG--FNVETVXY--KNISFTVWDVGGQDKI 352
+L++G GK+ +L + + I TIG F + T+ K I +WD GQ++
Sbjct: 12 LLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERF 71
Query: 353 RPLWRHYFQNTQGLIFVXXSNDRERIGEAREXLMRMLSEDELRDAVLLIFANKQD 517
R + Y++ G++ + D++ R + + + ++ NK D
Sbjct: 72 RTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSN-VEQHASENVYKILIGNKCD 125
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 39.9 bits (89), Expect = 3e-04
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Frame = +2
Query: 191 LMVGLDAAGKTTILYKLKLXEI-VTTIPTIGFNVET----VXYKNISFTVWDVGGQDKIR 355
+++G GK+ +L + E + + TIG T + K I +WD GQ++ R
Sbjct: 14 VLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQERYR 73
Query: 356 PLWRHYFQNTQGLIFVXXSNDRERIGEAREXLMRMLSEDELRDAVLLIFANKQDL 520
+ Y++ G + V + L + L E + V+++ NK DL
Sbjct: 74 AITSAYYRGAVGALIVYDITKQSSFDNVGRWL-KELREHADSNIVIMLVGNKTDL 127
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 37.9 bits (84), Expect = 0.001
Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Frame = +2
Query: 158 NGLFGKKEMXILMVGLDAAGKTTILYKLKLXEIVTTIP-TIGFN-VETVXY---KNISFT 322
N F ++ ++ +G + GKT+++ + + T TIG + + Y + +
Sbjct: 4 NYSFSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQ 63
Query: 323 VWDVGGQDKIRPLWRHYFQNTQGLIFVXXSNDRERIGEAREXLMRMLSEDELRDAVLLIF 502
+WD GQ++ R L Y +++ I V + + + + +E D ++++
Sbjct: 64 LWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAE-RGDDVIIVLV 122
Query: 503 ANKQDL 520
NK DL
Sbjct: 123 GNKTDL 128
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +2
Query: 305 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVXXSNDRERIGEAREXLMRMLSEDELRD 484
K I +WD GQ+K R + R+Y++ G + V +++ E L + +
Sbjct: 60 KRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTI 119
Query: 485 AVLLIFANKQDLPN 526
V+L +K DL N
Sbjct: 120 CVVLA-GSKSDLQN 132
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 266 IPTIGFNVETVXYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 403
I T G + ET + +DVGGQ R W H F+N L+F+
Sbjct: 219 IKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFL 264
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +2
Query: 143 LRIYLNGLFGKKEMXILMVGLDAAGKTTILYKLKL 247
+R+ N G ++ +L++G +GKTTI+ +++L
Sbjct: 62 VRVKGNSTSGGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 35.1 bits (77), Expect = 0.009
Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Frame = +2
Query: 188 ILMVGLDAAGKTTILYKLKLXEIVT-TIPTIG--FNVETVXYK---NISFTVWDVGGQDK 349
++++G A GK++++ + + TIG F +T+ ++ +WD GQ++
Sbjct: 17 LVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQER 76
Query: 350 IRPLWRHYFQNTQGLIFVXXSNDRERIGEAREXLMRMLSEDELRDAVLLIFANKQDLPNA 529
+ L Y++N I V + +A+ + + L V+ + NK DL
Sbjct: 77 YKSLAPMYYRNANCAIVVYDITQAASLEKAKSWI-KELQRQAPEGIVIALAGNKLDLAQE 135
Query: 530 MNAAEITD 553
A E D
Sbjct: 136 RRAVEKAD 143
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 34.3 bits (75), Expect = 0.016
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 272 TIGFNVETVXYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVXXSNDRER 427
T+G + + ++ ++DVGGQ R W + F+N +IF ND ++
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDK 230
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 33.9 bits (74), Expect = 0.021
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = +2
Query: 188 ILMVGLDAAGKTTILYKLKLXEIVTT-IPTIGFNVETVXYKN----ISFTVWDVGGQDKI 352
+++VG GKTT + + E I T+G V + + I F VWD GQ+K+
Sbjct: 12 LVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEKL 71
Query: 353 RPLW-RHYFQNTQGLI 397
L +Y Q G+I
Sbjct: 72 GGLRDGYYIQGQCGII 87
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 31.5 bits (68), Expect = 0.11
Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Frame = +2
Query: 194 MVGLDAAGKTTILYKL---KLXEIVTTIPTIGFNVETVXYKN--ISFTVWDVGGQDKIRP 358
M+G + GKT+++ E T + F +T+ +N I+F++WD+GGQ +
Sbjct: 15 MIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVN 74
Query: 359 LWRHYFQNTQGLIFVXXSNDRERIGEARE 445
+ + ++F+ + + + +E
Sbjct: 75 MLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 31.1 bits (67), Expect = 0.15
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Frame = +2
Query: 188 ILMVGLDAAGKTTILYKLKLXEIVTT-IPTIGFNVET---VXYKNISFTVWDVGGQ---D 346
+++VG A GKT++L L T +PT+ N + V K++ +WD GQ +
Sbjct: 11 LVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEYE 70
Query: 347 KIRPL 361
++RP+
Sbjct: 71 RLRPM 75
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 30.3 bits (65), Expect = 0.25
Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Frame = +2
Query: 170 GKKE--MXILMVGLDAAGKTTILYKLKLXEIVTTIP-TIGFNVET----VXYKNISFTVW 328
GKK+ + ++++G GKT+I+ + + TIG + T V K ++ +W
Sbjct: 3 GKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLW 62
Query: 329 DVGGQDKIRPLWRHYFQNTQGLIFVXXSNDR---ERIGEAREXLMRMLSEDELRDAVLLI 499
D GQ++ + L +++ + V N+ E + R+ + S ++
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFIL 122
Query: 500 FANKQDL 520
NK D+
Sbjct: 123 LGNKVDV 129
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 30.3 bits (65), Expect = 0.25
Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Frame = +2
Query: 173 KKEMXILMVGLDAAGKTTILYKLKLXEIVTTIPTIGFNVETVXYKNISFTVWDVGGQDKI 352
KK + ++G +GKT++ +L E TT+P+I N E V +K ++ V D+ G +
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPN-EAV-WKYGAWLV-DLPGHPRA 91
Query: 353 RPLWRHYFQ---NTQGLIFVXXSNDRER-IGEAREXLMRMLSEDELRDAV-LLIFANKQD 517
+ F N + ++FV S +R + E L + + LLI NK D
Sbjct: 92 KRWITTKFSGNYNVKAVVFVLNSATIDRDVHEVGLMLFDTILKCRKHHVPHLLIACNKFD 151
Query: 518 LPNAMNAAEITD--KLGLHS-LRNRNWYIQATCATSGD 622
L A A +I K LH+ L +N +++ + D
Sbjct: 152 LFTAQPAEKIQQLLKAELHNILEEKNLQLESIVSEDVD 189
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 28.7 bits (61), Expect = 0.77
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 131 ILNYYEYNFQKQSRIKEKTQHQ*IPNN-SRMSKWRRTWKFV 12
IL Y E K IK+ +Q N ++ SKW++ WK V
Sbjct: 258 ILMYLERQANKDENIKKIINYQTEEKNKNKQSKWQKLWKAV 298
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Frame = +2
Query: 308 NISFTVWDVGGQDKIRPLW-----RHYFQNTQGLIFVXXSNDRE 424
N+ +WD GGQ+ + H F+N Q LI+V RE
Sbjct: 50 NLVLNLWDCGGQEAFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 27.5 bits (58), Expect = 1.8
Identities = 21/106 (19%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
Frame = +2
Query: 182 MXILMVGLDAAGKTTILYKLKLXEIVTTIP-TIGFNVET----VXYKNISFTVWDVGGQD 346
+ ++++G GKT ++ + + TIG + T V K ++ +WD GQ+
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 347 KIRPLWRHYFQNTQGLIFVXXSNDR---ERIGEAREXLMRMLSEDE 475
+ + L +++ + V N+ + + R+ + S+DE
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDE 114
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +2
Query: 188 ILMVGLDAAGKTTILYKLKL 247
I+MVGL +GKTT KL L
Sbjct: 104 IMMVGLQGSGKTTTCSKLAL 123
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 339 AKTKSDHCGGIISKIHRV*SSXXTVTIGNVSARH 440
A K+ + GG++S + ++ ++ TVT +S +H
Sbjct: 210 ANPKASYRGGVLSNLLKLYTNSNTVTSSRISLKH 243
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 5.5
Identities = 7/22 (31%), Positives = 12/22 (54%)
Frame = +1
Query: 10 RTNFHVRRHFDIRELLGIHWCC 75
+ N + HF+ +G +WCC
Sbjct: 467 KINHRIPHHFESHTNIGANWCC 488
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 209 HPNQPS--IXSFPFCQKGRLNKFANIFPILNYYEYNFQKQSR 90
H NQ S I FP+ LN +NIF L + + + Q+Q +
Sbjct: 7 HENQSSENIIEFPYVDFEELNVHSNIFSELEHAKPSTQQQQQ 48
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -3
Query: 636 PSYSPSPEVAHVAWMYQLRLRSECRPSL-SVISAAFIAFGRSCLFA 502
P+ SP PEV+H W+ L P L S + IAF CL A
Sbjct: 16 PNSSPDPEVSHKLWVSSLNKFQYTLPLLISNFAGLGIAF-IYCLIA 60
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 173 KKEMXILMVGLDAAGKTTILYKLKLXEIVTTIPTIG 280
KK++ + ++G AGK++I+ L+ ++ P G
Sbjct: 308 KKQISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPG 343
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 315 LMFLYXTVSTLKPIVGIVVTISXNLSLYRIVVLPAASKPTINIXISFL 172
+ F T T++P V + ++S N +L VVL + + +IN+ L
Sbjct: 185 VFFHEYTTETIRPHVRLHNSLSTNAALSASVVLASRLEKSINVFFFIL 232
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 173 KKEMXILMVGLDAAGKTTILYKL 241
KK I++VG+ +GKTT + +L
Sbjct: 6 KKPCAIIVVGMAGSGKTTFMQQL 28
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
Frame = -3
Query: 360 SGLILSWPPTSHTV-KLMFL 304
SG+ILSW P+S + K++FL
Sbjct: 128 SGIILSWSPSSFLLGKIVFL 147
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 25.0 bits (52), Expect = 9.5
Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
Frame = +2
Query: 155 LNGLFGKKEMXI----LMVGLDAAGKTTILYKLKLXEIVTTI-PTIGFNVET---VXYKN 310
++ FG K+ I +++G AAGKT++L PTI N V +
Sbjct: 1 MSSCFGSKKKPIYRKIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNS 60
Query: 311 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVXXSNDRERI 430
I ++WD GQ++ L + +T ++ + R+ +
Sbjct: 61 IELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSL 100
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,816
Number of Sequences: 5004
Number of extensions: 51870
Number of successful extensions: 186
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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