Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_F16
(505 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 94 7e-20
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 93 1e-19
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 90 1e-18
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 36 0.018
08_01_0180 - 1524302-1524877,1525998-1527056 31 0.69
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 29 2.8
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348... 29 2.8
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 29 2.8
01_05_0426 + 22042215-22042595,22044846-22045688 27 6.5
04_04_0208 - 23605701-23607149 27 8.6
02_01_0686 + 5112712-5112942 27 8.6
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 93.9 bits (223), Expect = 7e-20
Identities = 42/73 (57%), Positives = 57/73 (78%)
Frame = +3
Query: 111 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 290
A + G + +A ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKGPVR+P
Sbjct: 9 AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGPVRIP 68
Query: 291 TKILRITTRKTPC 329
TK+L ITTRK+PC
Sbjct: 69 TKVLHITTRKSPC 81
Score = 80.6 bits (190), Expect = 7e-16
Identities = 37/48 (77%), Positives = 41/48 (85%)
Frame = +1
Query: 331 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIAD 474
GEG+ TWDRF+ RIHKRVIDL S ++VKQITSI IEPGV VEVTIAD
Sbjct: 82 GEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIAD 129
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 93.1 bits (221), Expect = 1e-19
Identities = 46/78 (58%), Positives = 60/78 (76%), Gaps = 4/78 (5%)
Frame = +3
Query: 108 MAAAVV----SGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKG 275
MAAA V G + +A ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKG
Sbjct: 1 MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60
Query: 276 PVRMPTKILRITTRKTPC 329
PVR+PTK+L ITTRK+PC
Sbjct: 61 PVRIPTKVLHITTRKSPC 78
Score = 80.6 bits (190), Expect = 7e-16
Identities = 37/48 (77%), Positives = 41/48 (85%)
Frame = +1
Query: 331 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIAD 474
GEG+ TWDRF+ RIHKRVIDL S ++VKQITSI IEPGV VEVTIAD
Sbjct: 79 GEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIAD 126
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 89.8 bits (213), Expect = 1e-18
Identities = 44/73 (60%), Positives = 56/73 (76%)
Frame = +3
Query: 111 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMP 290
A + SGK + EV HRIRITL+S++V++LEKVC DL+ GAK + L+VKGPVRMP
Sbjct: 9 APPMKSGKIGFESSQEVQ--HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRMP 66
Query: 291 TKILRITTRKTPC 329
TK+L ITTRK+PC
Sbjct: 67 TKVLHITTRKSPC 79
Score = 81.8 bits (193), Expect = 3e-16
Identities = 36/48 (75%), Positives = 43/48 (89%)
Frame = +1
Query: 331 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIAD 474
GEG+ TWDRF+MR+HKRVIDL S +++VKQITSI IEPGV VEVTI+D
Sbjct: 80 GEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 35.9 bits (79), Expect = 0.018
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +3
Query: 159 VSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTK 296
++P +IRI L S V +E C +I AK + GPV +PTK
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGPVPLPTK 374
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +1
Query: 358 FQMRIHKRVIDLHSP-SEIVKQITSINIEPGVXVEVTI 468
F++R H+R+ID+ P ++ + + + + GV VEV +
Sbjct: 394 FEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 431
>08_01_0180 - 1524302-1524877,1525998-1527056
Length = 544
Score = 30.7 bits (66), Expect = 0.69
Identities = 25/72 (34%), Positives = 34/72 (47%)
Frame = +3
Query: 147 PQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTP 326
P +P H + I +S N ++L VC D G Q R G + +LR R+ P
Sbjct: 391 PAVAFAPPHDM-IRASSTNSKNLV-VCGD---GHLYQTWRCDG---VHILVLRYHPRRRP 442
Query: 327 CW*RFKDLGSFS 362
CW KDLG +S
Sbjct: 443 CWLPAKDLGGYS 454
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 110 GSRCSVRQRHRETPGRGLPYSP 175
G CS R+RHR G LP++P
Sbjct: 73 GVTCSRRRRHRRVTGLSLPHTP 94
>06_02_0345 +
14833838-14833997,14834095-14834552,14834633-14834870,
14834974-14835431,14836554-14836955
Length = 571
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +2
Query: 176 HQDHSYFSQCALTREGLC*PNQWSQETEAACKG--PSPH---ANQDPA 304
H S +CAL R+G +W ET C G P+P +QDPA
Sbjct: 11 HHLQSTLFECALLRDGRAESFEWLFETFKNCMGNCPTPRCILTDQDPA 58
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 203 CALTREGLC*PNQWSQETEAACKGPSP 283
C L EGL ++W++ A +GPSP
Sbjct: 155 CRLAAEGLVTASKWARPGRAGTRGPSP 181
>01_05_0426 + 22042215-22042595,22044846-22045688
Length = 407
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/43 (32%), Positives = 15/43 (34%)
Frame = +2
Query: 182 DHSYFSQCALTREGLC*PNQWSQETEAACKGPSPHANQDPAYH 310
DH A TR G+ E P PH PAYH
Sbjct: 13 DHGVRQVWADTRHGIAGGEHERVHAETFALAPQPHKQHRPAYH 55
>04_04_0208 - 23605701-23607149
Length = 482
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 297 ILRITTRKTPCW*RFKDLGSFS 362
+LR R+ PCW DLG +S
Sbjct: 361 VLRYYPRRQPCWDAVTDLGGYS 382
>02_01_0686 + 5112712-5112942
Length = 76
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 79 FISAGIQQA-TWQPL*CQAKTSRNPRQRSPLFTASGSLLLLAMCAHSRR 222
FI A + + W+ + K +RN R+R LF L LA A RR
Sbjct: 6 FIGAALIEVWRWEERMVEKKRTRNTRERGGLFPRKLQLRALAAIARFRR 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,110,520
Number of Sequences: 37544
Number of extensions: 308429
Number of successful extensions: 817
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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