Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F16
         (505 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y11119-1|CAA72004.1|  120|Drosophila melanogaster S20 ribosomal ...   111   4e-25
AY071742-1|AAL49364.1|  120|Drosophila melanogaster RH47995p pro...   111   4e-25
AE014297-2870|AAF55809.1|  120|Drosophila melanogaster CG15693-P...   111   4e-25
AY071353-1|AAL48975.1|  120|Drosophila melanogaster RE38972p pro...   107   1e-23

>Y11119-1|CAA72004.1|  120|Drosophila melanogaster S20 ribosomal
           protein protein.
          Length = 120

 Score =  111 bits (268), Expect = 4e-25
 Identities = 54/67 (80%), Positives = 57/67 (85%), Gaps = 1/67 (1%)
 Frame = +3

Query: 132 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 308
           KDIEKP   + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGPVRMPTK LRI
Sbjct: 6   KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRI 65

Query: 309 TTRKTPC 329
           TTRKTPC
Sbjct: 66  TTRKTPC 72



 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 44/48 (91%), Positives = 47/48 (97%)
 Frame = +1

Query: 331 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIAD 474
           GEGSKTWDRFQMRIHKR+IDLHSPSEIVK+ITSINIEPGV VEVTIA+
Sbjct: 73  GEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGVEVEVTIAN 120


>AY071742-1|AAL49364.1|  120|Drosophila melanogaster RH47995p
           protein.
          Length = 120

 Score =  111 bits (268), Expect = 4e-25
 Identities = 54/67 (80%), Positives = 57/67 (85%), Gaps = 1/67 (1%)
 Frame = +3

Query: 132 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 308
           KDIEKP   + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGPVRMPTK LRI
Sbjct: 6   KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRI 65

Query: 309 TTRKTPC 329
           TTRKTPC
Sbjct: 66  TTRKTPC 72



 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 44/48 (91%), Positives = 47/48 (97%)
 Frame = +1

Query: 331 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIAD 474
           GEGSKTWDRFQMRIHKR+IDLHSPSEIVK+ITSINIEPGV VEVTIA+
Sbjct: 73  GEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGVEVEVTIAN 120


>AE014297-2870|AAF55809.1|  120|Drosophila melanogaster CG15693-PA
           protein.
          Length = 120

 Score =  111 bits (268), Expect = 4e-25
 Identities = 54/67 (80%), Positives = 57/67 (85%), Gaps = 1/67 (1%)
 Frame = +3

Query: 132 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 308
           KDIEKP   + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGPVRMPTK LRI
Sbjct: 6   KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRI 65

Query: 309 TTRKTPC 329
           TTRKTPC
Sbjct: 66  TTRKTPC 72



 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 44/48 (91%), Positives = 47/48 (97%)
 Frame = +1

Query: 331 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIAD 474
           GEGSKTWDRFQMRIHKR+IDLHSPSEIVK+ITSINIEPGV VEVTIA+
Sbjct: 73  GEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGVEVEVTIAN 120


>AY071353-1|AAL48975.1|  120|Drosophila melanogaster RE38972p
           protein.
          Length = 120

 Score =  107 bits (256), Expect = 1e-23
 Identities = 52/67 (77%), Positives = 56/67 (83%), Gaps = 1/67 (1%)
 Frame = +3

Query: 132 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRI 308
           KDIEKP   + + +H IRITLTSRNVRSLE VC DLINGAK Q LRV+GPVRMPTK LRI
Sbjct: 6   KDIEKPHVGDSASVHCIRITLTSRNVRSLENVCRDLINGAKNQNLRVEGPVRMPTKTLRI 65

Query: 309 TTRKTPC 329
           TTRKTPC
Sbjct: 66  TTRKTPC 72



 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 44/48 (91%), Positives = 47/48 (97%)
 Frame = +1

Query: 331 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIAD 474
           GEGSKTWDRFQMRIHKR+IDLHSPSEIVK+ITSINIEPGV VEVTIA+
Sbjct: 73  GEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGVEVEVTIAN 120


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,245,894
Number of Sequences: 53049
Number of extensions: 518450
Number of successful extensions: 1526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1525
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1804766976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)