Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F16
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...    93   1e-19
U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical pr...    28   3.3  
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...    28   4.4  
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass...    27   7.7  
AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical ...    27   7.7  
AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score = 92.7 bits (220), Expect = 1e-19
 Identities = 41/53 (77%), Positives = 48/53 (90%)
 Frame = +3

Query: 171 HRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTPC 329
           HRIR+TLTS+NV+ LEKVCA LI+GAK + L VKGP+RMPTK+LRITTRKTPC
Sbjct: 17  HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGPIRMPTKVLRITTRKTPC 69



 Score = 87.0 bits (206), Expect = 7e-18
 Identities = 37/48 (77%), Positives = 46/48 (95%)
 Frame = +1

Query: 331 GEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVXVEVTIAD 474
           GEGSKTWDRFQMRIHKR+I+LH+P+E+++QITSI+IEPGV +EVT AD
Sbjct: 70  GEGSKTWDRFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIEVTRAD 117


>U67947-1|AAB07557.2| 1147|Caenorhabditis elegans Hypothetical
           protein H03E18.1 protein.
          Length = 1147

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 213 LEKVCADLINGAKKQKLRVKGPVRMPTKILRITTRKTP 326
           +E V A  + G KK+  + K   + PTK    +T++ P
Sbjct: 359 VELVTAKTVEGEKKETKKPKSTTKKPTKTAAASTKRPP 396


>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
            protein F28B3.1 protein.
          Length = 1539

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 144  KPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKK 254
            + +A+ SP HRI   +TS+N       C+ L+  A++
Sbjct: 943  RSRAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979


>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 158 protein.
          Length = 1003

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 211 ERTL-REVRVILMR*IGETSAWGFSMSLPDTTA 116
           ERTL  E R ++MR + + S  G S+SLP   A
Sbjct: 838 ERTLLMEERTMMMRDLQKVSGGGMSLSLPPANA 870


>AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical
           protein C54E4.2a protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 108 MAAAVVSGKDIEKPQAEVSPIH 173
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


>AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical
           protein C54E4.2b protein.
          Length = 234

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +3

Query: 108 MAAAVVSGKDIEKPQAEVSPIH 173
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,583,579
Number of Sequences: 27780
Number of extensions: 247396
Number of successful extensions: 561
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)