Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_F15
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 200 8e-53
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 200 1e-52
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su... 27 2.4
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 27 2.4
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.4
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 26 3.2
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 3.2
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 5.6
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 25 5.6
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.3
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 25 9.7
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 9.7
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 200 bits (489), Expect = 8e-53
Identities = 96/149 (64%), Positives = 111/149 (74%), Gaps = 1/149 (0%)
Frame = +3
Query: 75 AAPAHLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVT 254
A + F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT
Sbjct: 9 ARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVT 68
Query: 255 AHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLXRVKENERLLKEAKAAGKTVNL 434
++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L
Sbjct: 69 QSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQL 128
Query: 435 KRQPAPPKAAHIVS-GTXKPVLLAPIPYE 518
+RQPAPP AH VS +PV L P+ Y+
Sbjct: 129 RRQPAPPATAHFVSTENNEPVTLHPVAYD 157
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 200 bits (488), Expect = 1e-52
Identities = 96/149 (64%), Positives = 111/149 (74%), Gaps = 1/149 (0%)
Frame = +3
Query: 75 AAPAHLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVT 254
A + F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGKTG VYNVT
Sbjct: 9 ARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVT 68
Query: 255 AHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLXRVKENERLLKEAKAAGKTVNL 434
++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L
Sbjct: 69 QSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQL 128
Query: 435 KRQPAPPKAAHIVS-GTXKPVLLAPIPYE 518
+RQPAPP AH VS +PV L P+ Y+
Sbjct: 129 RRQPAPPAKAHFVSTENNEPVTLHPVAYD 157
>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 26.6 bits (56), Expect = 2.4
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -2
Query: 59 EFVIFEPCVTKLDG 18
EFVIFE C+T+++G
Sbjct: 726 EFVIFEACLTRIEG 739
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 26.6 bits (56), Expect = 2.4
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Frame = -2
Query: 491 GFXSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSXKEVLSALGVLDMLN 327
GF S+T SF+G W+ L + + G L G LQ + +++S EV ++ + L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503
Query: 326 TDIDALRYN 300
++RY+
Sbjct: 504 RAFGSIRYS 512
>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 308
Score = 26.6 bits (56), Expect = 2.4
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 337 SSTPSADKTSLXES-KRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELXNPSYLRLSH 513
S+TPS + L S KR+ G R+ +R + PL++PT+ V L + LS
Sbjct: 145 SNTPSDSSSPLCNSSKRVVGMLRRFLPSSRMVRLSKAHQPLRIPTTGVSLDSADLTPLSV 204
Query: 514 TNS 522
+ S
Sbjct: 205 STS 207
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 26.2 bits (55), Expect = 3.2
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = -2
Query: 422 LAGSLGFLQ*PLILFDSXKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESM 258
+A SLG Q +L +LSA G M D+ + PS+ TL D++TES+
Sbjct: 509 IAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEPSSFTLDDSNTESI 557
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +2
Query: 122 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 226
+ L H SW + R+ C +KGY PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 317 DALRYNPSANTLVDNHTES 261
D R N S N ++DNHT++
Sbjct: 29 DPARKNESTNDVIDNHTDT 47
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 25.4 bits (53), Expect = 5.6
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 310 SASISVLSMSSTPSADKTSLXESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELXN 489
SAS S S++S+ S D ++ +R R RKP + +P+ + + P + T +
Sbjct: 56 SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDKSK 114
Query: 490 P 492
P
Sbjct: 115 P 115
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 402 EAKAAGKTVNLKRQPAPPKAAHIVSGT 482
+ KA K + +QP+PP A H + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -2
Query: 245 VHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 117
+ + C V H + T+ V N +H++ ERNS+
Sbjct: 83 IASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 24.6 bits (51), Expect = 9.7
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -2
Query: 446 WLSLQVDGLAGSLGF 402
WL+++ DG++G +GF
Sbjct: 1085 WLAIRTDGISGLVGF 1099
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,180,634
Number of Sequences: 5004
Number of extensions: 42739
Number of successful extensions: 156
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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