Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_F15
(549 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 183 7e-47
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 33 0.10
Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical pr... 33 0.10
Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical pr... 33 0.10
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 30 0.95
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z81491-1|CAB04019.1| 181|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 27 6.7
AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical ... 27 8.9
AF016451-13|AAB66007.1| 445|Caenorhabditis elegans Activated in... 27 8.9
AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in ... 27 8.9
AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in ... 27 8.9
AF016451-3|AAB66001.1| 388|Caenorhabditis elegans Prion-like-(q... 27 8.9
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 183 bits (446), Expect = 7e-47
Identities = 88/148 (59%), Positives = 109/148 (73%), Gaps = 2/148 (1%)
Frame = +3
Query: 87 HLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHAL 266
++FAR FR HG LSTY YK GD+VDI+ NGA QKGMP K YHG+TGR++NVT A+
Sbjct: 13 YMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGRTGRIFNVTRGAV 72
Query: 267 GVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLXRVKENERLLKEAKAAGKTV-NLKRQ 443
G+IVNKRVRG I+PKRINIR+EH+K SKCR DFL RVK N+ K AK+AG+ V LKR
Sbjct: 73 GIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRL 132
Query: 444 PAPPKAAH-IVSGTXKPVLLAPIPYEFV 524
P P+ AH + + +P LLAP+ +E V
Sbjct: 133 PVAPRGAHTVTTQNNEPELLAPLRFEIV 160
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 235 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 98
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-5|CAB54315.1| 568|Caenorhabditis elegans Hypothetical
protein W06F12.2b protein.
Length = 568
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 235 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 98
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271
>Z83244-4|CAB54314.1| 562|Caenorhabditis elegans Hypothetical
protein W06F12.2a protein.
Length = 562
Score = 33.5 bits (73), Expect = 0.10
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = -3
Query: 235 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 98
PVFP Y+ G+P PLP +P M V+ + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 30.3 bits (65), Expect = 0.95
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 152 QSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQAC 289
Q RHC Q C S Y W+ RSRV +C+ + Q C
Sbjct: 366 QPVRHCSEQDATCDSPFYWCDMKLWRCRSRVVYGGNCTGYEGTQIC 411
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 28.3 bits (60), Expect = 3.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 429 NLKRQPAPPKAAHIVS 476
NL+R+PAPPK H+ S
Sbjct: 462 NLRRRPAPPKQNHVAS 477
>Z81491-1|CAB04019.1| 181|Caenorhabditis elegans Hypothetical
protein D1086.1 protein.
Length = 181
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +2
Query: 209 TQSIPW--KDRSRVQRDCSCSRCDCQQACSRKDYTEA 313
T+ + W D+SR+ D C++ ++ C KD+ +A
Sbjct: 120 TECVQWYFSDKSRMSTDQKCAQFKAKKQCIEKDFGKA 156
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 245 QRDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQ 340
++ C C+ R +C R YT+ QY C +CQ
Sbjct: 26 RQSCGCAPRVQPSCSCQRTTYTQPQQYSC-SCQ 57
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 245 QRDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQ 340
++ C C+ R +C R YT+ QY C +CQ
Sbjct: 26 RQSCGCAPRVQPSCSCQRTTYTQPQQYSC-SCQ 57
>AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical
protein Y80D3A.9 protein.
Length = 279
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -2
Query: 494 DGFXSSTDDVGSFRGSWLSLQVDGLAGSL 408
DG S D+ RG+WL + G G L
Sbjct: 39 DGMLSGVDEKDVARGTWLGMDAHGKVGML 67
>AF016451-13|AAB66007.1| 445|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 8 protein.
Length = 445
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +2
Query: 245 QRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*XSQRE*EATEGSQGCRQD 424
Q CSC + Q+CS + Q P +C Q QT+ Q + ++T+ + C+Q
Sbjct: 35 QSQCSCQQVQQTQSCSCQSAPVQQQSPSCSCAQPQ-QTQ-----QVQVQSTQCAPACQQS 88
Query: 425 RQPEETAS 448
Q + AS
Sbjct: 89 CQQQCQAS 96
>AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 7 protein.
Length = 438
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +2
Query: 245 QRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*XSQRE*EATEGSQGCRQD 424
Q CSC + Q+CS + Q P +C Q QT+ Q + ++T+ + C+Q
Sbjct: 35 QSQCSCQQVQQTQSCSCQSAPVQQQSPSCSCAQPQ-QTQ-----QVQVQSTQCAPACQQS 88
Query: 425 RQPEETAS 448
Q + AS
Sbjct: 89 CQQQCQAS 96
>AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 6 protein.
Length = 388
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +2
Query: 245 QRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*XSQRE*EATEGSQGCRQD 424
Q CSC + Q+CS + Q P +C Q QT+ Q + ++T+ + C+Q
Sbjct: 35 QSQCSCQQVQQTQSCSCQSAPVQQQSPSCSCAQPQ-QTQ-----QVQVQSTQCAPACQQS 88
Query: 425 RQPEETAS 448
Q + AS
Sbjct: 89 CQQQCQAS 96
>AF016451-3|AAB66001.1| 388|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 5
protein.
Length = 388
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +2
Query: 245 QRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*XSQRE*EATEGSQGCRQD 424
Q CSC + Q+CS + Q P +C Q QT+ Q + ++T+ + C+Q
Sbjct: 35 QSQCSCQQVQQTQSCSCQSAPVQQQSPSCSCAQPQ-QTQ-----QVQVQSTQCAPACQQS 88
Query: 425 RQPEETAS 448
Q + AS
Sbjct: 89 CQQQCQAS 96
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,308,854
Number of Sequences: 27780
Number of extensions: 252096
Number of successful extensions: 866
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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