Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F12
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    31   0.11 
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    29   0.77 
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa...    28   1.0  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   9.5  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   9.5  

>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +1

Query: 115 SKIKLPGPHQLVYKDECVYSFDNPESETGLYVSLVSF 225
           + + +P   Q++Y++ECV  F++ + E G+ + L  F
Sbjct: 9   TNVVIPDNSQVIYREECVRCFNSQDEEGGIDLCLTCF 45


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 212 PWCHSCGFGRNYVEQYFQKTGNAVFLHIRREK 307
           PW   C       +Q+ + T NAVFL I  EK
Sbjct: 30  PWAAPCKQMNQVFDQFAKDTKNAVFLKIEAEK 61


>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 396

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -2

Query: 411 GFPHSGSKPPSTPMASLVIFFSG 343
           G  H GSK P+ PMA +  FF+G
Sbjct: 369 GVGHMGSKSPNDPMAYVQHFFAG 391


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 106 SHLSKIKLPGPHQLVYKDECVYSFDNPESET 198
           SHL K+K    HQL    + V SF N ++ +
Sbjct: 16  SHLEKLKEAMDHQLQKSSKIVGSFTNSQNSS 46


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 240 AITLNSISRKPETPSSYISEERNNQSLNQSKQA 338
           +I+ +S S  P TPSSY+S    + S+  S+ +
Sbjct: 472 SISHSSASSLPITPSSYLSNTTLHSSVQSSQSS 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,876,497
Number of Sequences: 5004
Number of extensions: 64046
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)