Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_F12
(652 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25) 46 2e-05
SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0) 31 0.62
SB_3564| Best HMM Match : DUF1525 (HMM E-Value=8.1) 31 1.1
SB_1473| Best HMM Match : DUF551 (HMM E-Value=1.6) 29 2.5
SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024) 28 5.7
SB_48854| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_6780| Best HMM Match : DM4_12 (HMM E-Value=5.3) 28 5.7
SB_35674| Best HMM Match : SH2 (HMM E-Value=0) 28 7.6
SB_31609| Best HMM Match : Peptidase_M16_C (HMM E-Value=5.7e-08) 28 7.6
>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
Length = 1088
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/52 (46%), Positives = 35/52 (67%)
Frame = +2
Query: 497 PVKKSVQAVIDAESPFKIAELAALQGTWDGEKREVSVHSVNLKQLDNGIRIP 652
PV+ S+ V+ A++ ++A+ WDGEKR VS H+ +L QLDNG+RIP
Sbjct: 30 PVQLSLAGVLAADTSAYKEQVAS----WDGEKRVVSKHAESLLQLDNGVRIP 77
Score = 36.7 bits (81), Expect = 0.016
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 115 SKIKLPGPHQLVYKDECVYSFDNP 186
+ I++PG VYKDECVY FD+P
Sbjct: 7 ANIRVPGGGDKVYKDECVYCFDSP 30
>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
Length = 2376
Score = 31.5 bits (68), Expect = 0.62
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +2
Query: 473 WPDPNLPEPVKKSVQAVIDAESPFKIAELAALQGTWDGEKREVSVHSVNLKQLDNGIRIP 652
W D NLP+ V K + ++++ SP EL A G G + V V LK L I +P
Sbjct: 1016 WIDKNLPDLVVKDITSLLEGGSPL---ELIAANGGKIGYEGYVEVCFSLLKPLKTEITVP 1072
>SB_3564| Best HMM Match : DUF1525 (HMM E-Value=8.1)
Length = 442
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 490 TRTCKEISSSCYRCRITIQNRRIGSITRHL 579
T T +++SSS ++CR+ I+ RR+ + R L
Sbjct: 352 TTTHQKVSSSHWKCRVVIEKRRVVIVKRRL 381
>SB_1473| Best HMM Match : DUF551 (HMM E-Value=1.6)
Length = 917
Score = 29.5 bits (63), Expect = 2.5
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Frame = +2
Query: 272 GNAVFLHIRREKQPIPEPEQTGDGPEKK-ITKL-AIGVEGGFDPECGKPKFTYTDHYSVV 445
G +++R E +P+PE + EKK + KL A+ G + GK K + V
Sbjct: 198 GREYLVYVRYELRPLPEQNEDLFEMEKKLVVKLVAVDTLGNAMWDSGKYKTK-----ARV 252
Query: 446 VLPGFHTFPWPD-PNLPEPVKKSVQAVIDAESPFKIAELAALQGTWDGEK-REVSVHSVN 619
+P + W + P P + + + E E AAL T K RE V V
Sbjct: 253 TIPCQNNHAWAELPTEPPAITSVLDFEAEGELHSLCQEKAALSATSAATKTREAKVREVL 312
Query: 620 LKQLDNGI 643
++ +++ I
Sbjct: 313 IRFINSAI 320
>SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)
Length = 848
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +2
Query: 221 HSCGFGRNYVEQYFQKTGNAVFLHIRREKQPIPEP 325
+SCG ++ + F + G V LH+ +++P+ +P
Sbjct: 648 NSCGAVGHFTKSKFCRGGTKVKLHVYPDREPVAQP 682
>SB_48854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 624 LRLTECTETSRFSPSQVPCNAANSAILNGDSASI 523
+ L ET + CNA+ SA+LNG+S I
Sbjct: 29 MNLRTTAETLNITKVSAQCNASFSALLNGNSTKI 62
>SB_6780| Best HMM Match : DM4_12 (HMM E-Value=5.3)
Length = 160
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -2
Query: 390 KPPSTPMASLVIFFSGPSPVCSGSGIGCFSLLICKKTAF 274
K S P V+ F GPS + CFSLL+ + +
Sbjct: 7 KRESFPYEENVVVFGGPSQLTKVGHSNCFSLLVTSRKVY 45
>SB_35674| Best HMM Match : SH2 (HMM E-Value=0)
Length = 871
Score = 27.9 bits (59), Expect = 7.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 452 PGFHTFPWPDPNLPEPVKKSVQAVID 529
PG H P P LPEP+ +++ V D
Sbjct: 840 PGDHIGPQPPGTLPEPIYSAIKHVTD 865
>SB_31609| Best HMM Match : Peptidase_M16_C (HMM E-Value=5.7e-08)
Length = 456
Score = 27.9 bits (59), Expect = 7.6
Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 1/90 (1%)
Frame = +2
Query: 365 LAIGVEGGFDPECGKPKFT-YTDHYSVVVLPGFHTFPWPDPNLPEPVKKSVQAVIDAESP 541
L + + G DPE T + D V H PW DP P PV V E
Sbjct: 70 LCVVITGQVDPEKVFEALTPFEDRILVKGQLPPHVRPWQDPVPPLPVTTDVTIPFPTEDE 129
Query: 542 FKIAELAALQGTWDGEKREVSVHSVNLKQL 631
L +G ++R ++ + L L
Sbjct: 130 SSGMVLLGCRGPPSSDRRHMAAMQIMLDYL 159
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,838,132
Number of Sequences: 59808
Number of extensions: 504747
Number of successful extensions: 1302
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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