Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F12
         (652 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative transcrip...    27   0.39 
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    25   2.7  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    25   2.7  
AY578803-1|AAT07308.1|  474|Anopheles gambiae mothers against Dp...    23   6.3  
X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...    23   8.4  

>AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative
           transcription factor protein.
          Length = 593

 Score = 27.5 bits (58), Expect = 0.39
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -3

Query: 248 RNCVRIRKNDTRDT*RPVSDSGLSKEYTHS 159
           ++C  + +N+ R++  P S +G+S  Y HS
Sbjct: 412 QHCTCMLQNNARESISPASGTGMSPSYPHS 441


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 140 ISLCTKTNVYILLTTRNPRRVSMCPWCHSCGFGRNYVEQY 259
           IS+C  T V + +  R+P+   M PW  +   G++++ ++
Sbjct: 319 ISICV-TVVVLNVHFRSPQTHRMAPWVKTFFIGKDFLPRF 357


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 140 ISLCTKTNVYILLTTRNPRRVSMCPWCHSCGFGRNYVEQY 259
           IS+C  T V + +  R+P+   M PW  +   G++++ ++
Sbjct: 319 ISICV-TVVVLNVHFRSPQTHRMAPWVKTFFIGKDFLPRF 357


>AY578803-1|AAT07308.1|  474|Anopheles gambiae mothers against Dpp
           protein.
          Length = 474

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 484 RIRPWECVKSW*HHHTVMISVCKFRFSTFRIKASLNSY 371
           R+  W  ++S  HH    I  C++ FS  + +  +N Y
Sbjct: 104 RVWRWPDLQS--HHELKPIETCQYPFSAKQKEVCINPY 139


>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 552 QNWQHYKAPGMVKNVKFLYTLLTSSSWTMVS 644
           ++W   KAP M KN +   TL+  +  T ++
Sbjct: 28  KDWYDVKAPNMFKNRQSGKTLVNRTQGTKIA 58


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 737,156
Number of Sequences: 2352
Number of extensions: 17650
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)