Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F12
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       21   7.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.8  

>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 284 FLHIRREKQPIPEPEQTGD 340
           +++   E +P PEPE   D
Sbjct: 18  YIYAAPEPEPAPEPEAEAD 36


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 293 IRREKQPIPEPEQTGDGPEKKITKL 367
           I R  + +P P   GDG   ++ K+
Sbjct: 192 IHRSPELVPMPTLKGDGRHMEVIKI 216


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +3

Query: 504 RNQFKLLSMQNHHSKSQNWQHYKAPGMVK 590
           + Q +L  + +  +  ++W+H+K P +V+
Sbjct: 844 KEQAQLNLLASDPAVYEDWRHWKFPNLVE 872


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,742
Number of Sequences: 438
Number of extensions: 4302
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)