Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_F11
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03) 83 3e-16
SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0) 77 2e-14
SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28) 74 9e-14
SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0) 59 4e-09
SB_16059| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 2e-07
SB_58285| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_26607| Best HMM Match : K_tetra (HMM E-Value=3.3e-08) 31 1.1
SB_26344| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_42966| Best HMM Match : LAB_N (HMM E-Value=7.1) 28 7.7
>SB_7879| Best HMM Match : Sugar_tr (HMM E-Value=0.03)
Length = 201
Score = 82.6 bits (195), Expect = 3e-16
Identities = 40/104 (38%), Positives = 58/104 (55%)
Frame = +1
Query: 331 MIGCPLASWMLDTQGRKKALLYNXXXXXXXXXXMGFSKLATSVEMLIIGRFLIGINCGFA 510
MIG + GRK++LL N M S A + +L +GRF+IGINCG
Sbjct: 1 MIGALAGPLFANRFGRKRSLLANNGLAIVGALLMFLSYFAKTSPLLTVGRFVIGINCGMN 60
Query: 511 TTASPTYVSEIAPVRMRGAFGTVNQLAVGFGMTCGQILGIDVIL 642
T +P Y+SE+AP+ +RG+ GT+NQ + G+ G I G+ +L
Sbjct: 61 TAIAPIYLSELAPIHLRGSLGTLNQFGIVSGLLVGFIFGLKQVL 104
>SB_16011| Best HMM Match : Sugar_tr (HMM E-Value=0)
Length = 512
Score = 76.6 bits (180), Expect = 2e-14
Identities = 51/176 (28%), Positives = 83/176 (47%), Gaps = 3/176 (1%)
Frame = +1
Query: 112 VPXSRPAKMSSG-GTTGALLYAVSAAVLGMLQFGFNTGVINAPRKFIENFVRDNYEAKPS 288
V R +S G G ++ A A LG L FGF G ++ +E+ + ++ E+
Sbjct: 26 VQAERSISLSHGKDRVGRMVLATFIAALGPLSFGFCLGYSSSA---LEDLIAESKESVKL 82
Query: 289 LIF--SVIVSIFAVXGMIGCPLASWMLDTQGRKKALLYNXXXXXXXXXXMGFSKLATSVE 462
+ S S+ + ++G PL W L+ GRK ++ + + A S
Sbjct: 83 TVSQGSWFSSLVTLGAILGAPLGGWTLEYFGRKGTIMACAVPFEVGWMLIAY---ANSHY 139
Query: 463 MLIIGRFLIGINCGFATTASPTYVSEIAPVRMRGAFGTVNQLAVGFGMTCGQILGI 630
ML IGRF+ G+ G + P Y++EI+ +RG G+VNQLAV G+ +G+
Sbjct: 140 MLYIGRFITGLAVGMVSLTVPVYIAEISSPSLRGMLGSVNQLAVTMGLLLAYSMGV 195
>SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)
Length = 456
Score = 74.1 bits (174), Expect = 9e-14
Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 1/157 (0%)
Frame = +1
Query: 160 ALLYAVSAAVLGMLQFGFNTGVINAPRKFIENF-VRDNYEAKPSLIFSVIVSIFAVXGMI 336
A+ A A LG L FG+ G +A +EN D Y + + S+ + M+
Sbjct: 39 AVWMATFIAALGPLSFGYCMGYSSAATTQLENKNATDLYLNADEITW--FGSLLNIGAML 96
Query: 337 GCPLASWMLDTQGRKKALLYNXXXXXXXXXXMGFSKLATSVEMLIIGRFLIGINCGFATT 516
G P+ +++D GRK AL+ +GF K A ML GRF+ G+ G A+
Sbjct: 97 GGPIQGFLIDLIGRKFALILTSVPFCSGWLLIGFGKNAA---MLNAGRFMSGLGVGMASL 153
Query: 517 ASPTYVSEIAPVRMRGAFGTVNQLAVGFGMTCGQILG 627
P Y+SE A RGA G++NQL + G+ +G
Sbjct: 154 NVPVYISETASFSNRGAMGSINQLGITAGILISYAIG 190
>SB_8709| Best HMM Match : Sugar_tr (HMM E-Value=0)
Length = 493
Score = 58.8 bits (136), Expect = 4e-09
Identities = 41/147 (27%), Positives = 66/147 (44%)
Frame = +1
Query: 184 AVLGMLQFGFNTGVINAPRKFIENFVRDNYEAKPSLIFSVIVSIFAVXGMIGCPLASWML 363
A +G FG++TGV++ I + +IVS ++G L +
Sbjct: 57 AAIGGFLFGYDTGVVSGAMILISEVFHLS-----DFWHELIVSGTIGTAIVGAVLGGILN 111
Query: 364 DTQGRKKALLYNXXXXXXXXXXMGFSKLATSVEMLIIGRFLIGINCGFATTASPTYVSEI 543
D+ GRK L+ MG +A + +L++GR +IG+ G A+ P YV+E
Sbjct: 112 DSLGRKPVLVLCSGVFTAGAVVMG---VAGTKHVLLVGRLVIGLGIGGASMTVPIYVAEA 168
Query: 544 APVRMRGAFGTVNQLAVGFGMTCGQIL 624
AP MRG T+N L + G ++
Sbjct: 169 APSSMRGKLVTLNNLFITGGQFIASVV 195
>SB_16059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 52.8 bits (121), Expect = 2e-07
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Frame = +1
Query: 154 TGALLYAVSAAVLGM-LQFGFNTGVINAPRKFIENFVRDNYEAKPSLIFSVIVSIFAVXG 330
TG L+YA + AVLG QFG+N+ IN+P + I+ + + ++ + +S+IV IF G
Sbjct: 21 TGWLIYATAVAVLGSSFQFGYNSACINSPVEDIKKYFKTQHKPLATYDWSIIVGIFPFGG 80
Query: 331 MIGCPLASWMLDTQGRK 381
M+G + + + GR+
Sbjct: 81 MLGALVGPTLSNIIGRE 97
>SB_58285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 547
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/125 (18%), Positives = 48/125 (38%)
Frame = +1
Query: 238 RKFIENFVRDNYEAKPSLIFSVIVSIFAVXGMIGCPLASWMLDTQGRKKALLYNXXXXXX 417
++F + + + S+ V S+ ++G W+ D GR+ + +
Sbjct: 87 KEFTSTVTQWDLVCEDSIFQGVSSSVIFAGWLLGAIFIGWLSDRTGRRYVVYFGSLGLLA 146
Query: 418 XXXXMGFSKLATSVEMLIIGRFLIGINCGFATTASPTYVSEIAPVRMRGAFGTVNQLAVG 597
S L+ + ++ R ++G+ G ++ ++E VR R T+ V
Sbjct: 147 AAV---VSALSPFFWLFVLSRAIVGVMIGGSSLCQFILMTEFVGVRHRNVAATL----VW 199
Query: 598 FGMTC 612
F TC
Sbjct: 200 FAWTC 204
>SB_26607| Best HMM Match : K_tetra (HMM E-Value=3.3e-08)
Length = 412
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -3
Query: 224 TPVLKPNCSIPKTAALTAY--SSAPVVPPLDIFAGRXQGTLYEMISTSTNFRLNFVII 57
TP+L + TA Y +S P V LDI G+ QG+LY+ + +S + +II
Sbjct: 40 TPLLYDSPRRLSTAHAQCYHRASIPSVATLDISQGQGQGSLYDALFSSASEEDRIIII 97
>SB_26344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +1
Query: 190 LGMLQFGFNTGVINAPRKFIENFVRDNYEAKPSLIFSVIVSIFAVXGMIGCPLASWMLDT 369
LG FGF++GVIN ++ + ++ +L F V + IG LA W+ D
Sbjct: 9 LGGFLFGFDSGVINGT---VDGLRQAFNSSEAALGFEVASMLLGCA--IGAFLAGWLGDR 63
Query: 370 QGRKKALL 393
GR+ L+
Sbjct: 64 LGRRGVLI 71
>SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 152
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 535 SEIAPVRMRGAFGTVNQLAVGFGMTCGQ 618
++I +R R AFG VNQ G G C Q
Sbjct: 32 TQITSLRSRDAFGAVNQFFTGHGDKCVQ 59
>SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1705
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +1
Query: 151 TTGALLYAVSAAVLGMLQFGFNTGVINAPRKFIENFVRDNYEAKPSLIFSV 303
TTG + A + A + ++ G G +N+ + ++EN RDN++ + IF+V
Sbjct: 594 TTGDIRNAGTDARVYVILHGGEEGELNSGKIWLENDTRDNFKRGRTDIFTV 644
>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 28.7 bits (61), Expect = 4.4
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +1
Query: 367 TQGRKKALLYNXXXXXXXXXXMGFSKLATSVEMLIIGRFLIGINCGFATTASPTYVSEIA 546
T RK L++ GFS T+ L++ RF++GI T + + +++
Sbjct: 135 TFNRKNILVFCLLLWSGMTLLTGFS---TTYWHLLVTRFILGIGEAGCTPFATSLIADYF 191
Query: 547 PVRMRG-AFGTVN-QLAVGFGMT 609
P +RG A G N + +G+ M+
Sbjct: 192 PESLRGTALGVYNWGIYLGYSMS 214
>SB_42966| Best HMM Match : LAB_N (HMM E-Value=7.1)
Length = 94
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/55 (30%), Positives = 22/55 (40%)
Frame = +1
Query: 439 SKLATSVEMLIIGRFLIGINCGFATTASPTYVSEIAPVRMRGAFGTVNQLAVGFG 603
S + V L RF++G+ C T + T V E R G V Q FG
Sbjct: 7 SVVVDCVSFLCFLRFVVGVGCSGIFTGTFTLVLEFVGPNRRTMIGCVYQYYWAFG 61
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,932,945
Number of Sequences: 59808
Number of extensions: 401002
Number of successful extensions: 1073
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1067
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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