Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F11
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.6  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               23   3.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.8  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 183 RAHRVQQCPRCTTARHLCRTRXRDLI 106
           R+HR +  PRC  +    R R R+LI
Sbjct: 70  RSHRFKSLPRCQLSNK--RDRSRELI 93


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 227 MTPVLKPNCSIPKTA 183
           +TPV+  NC  P+TA
Sbjct: 22  VTPVMPCNCKAPETA 36


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/24 (25%), Positives = 14/24 (58%)
 Frame = -2

Query: 429 KSCSNNTECCVIEQXXXXXXSIEH 358
           K+C++ T+CC  +       +++H
Sbjct: 438 KTCNSKTKCCFAQDDGLCPYTLKH 461


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 5/15 (33%), Positives = 13/15 (86%)
 Frame = +3

Query: 480 IPDWNQLWLRNDGLA 524
           I +W++LW+ ++G++
Sbjct: 130 IDEWDRLWVLDNGIS 144


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,848
Number of Sequences: 438
Number of extensions: 4005
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)