Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F09
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   271   4e-74
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ...    25   5.9  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    25   5.9  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  271 bits (665), Expect = 4e-74
 Identities = 131/177 (74%), Positives = 147/177 (83%)
 Frame = +2

Query: 35  AVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 214
           A   ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3   AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62

Query: 215 EKGRRIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 394
           EKGRRIRELT++VQKRF   E +V LYAEKV  RGLCA+AQ ESLRYKL+ GLAVRRA Y
Sbjct: 63  EKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAY 122

Query: 395 GVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHVLL 565
           GVLR++ME+GA+GCEVV+SGKLR  RAKSMKF  G MIHSG P  D++++AT HVLL
Sbjct: 123 GVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLL 179


>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 444

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 331 DSAKTTSSHLFSIQXYRLLWNVESLLYYGSQLTDSASFLSEHTL 200
           +  KT  S+LF +    LL   ES     + L+D +S  S H L
Sbjct: 17  EKLKTMWSYLFKLFGITLLERTESWYTVKTHLSDDSSSSSSHRL 60


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +2

Query: 185 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAI-AQAESLRYKL 361
           MATR Q       RR  E  + +QK +N     V +  E+V   G   +  + +  RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWN--RNKVNMELERVRNEGTKLLQGKKQRRRYSI 783

Query: 362 IG 367
           +G
Sbjct: 784 LG 785


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,769
Number of Sequences: 5004
Number of extensions: 43557
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)