Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F09
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666...   290   6e-79
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414...    29   2.0  
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159...    29   2.6  
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090     28   6.0  
08_01_0346 - 3063440-3064189                                           28   6.0  
05_05_0311 - 24004380-24004440,24004685-24004756,24004875-240049...    28   6.0  
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989...    27   7.9  

>07_03_1220 -
           24966169-24966327,24966421-24966552,24966639-24966693,
           24967496-24967667,24967771-24967918,24968015-24968050
          Length = 233

 Score =  290 bits (711), Expect = 6e-79
 Identities = 143/173 (82%), Positives = 153/173 (88%)
 Frame = +2

Query: 47  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 226
           ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 7   ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66

Query: 227 RIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 406
           RIRELTSVVQKRFN PE  V LYAEKV  RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 67  RIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 126

Query: 407 FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHVLL 565
           F+MESGA+GCEV+VSGKLR QRAKSMKF  G MI SG P N Y+++A  HVLL
Sbjct: 127 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLL 179


>05_04_0322 +
           20239793-20240127,20240176-20240728,20241317-20241425,
           20244456-20244723,20244943-20245197,20245594-20246539
          Length = 821

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 304 GGYSWSLRYRPG-RISKIQAYRRSRCTSCLLWC 399
           G  SWS RY+    ISK   Y   RC  C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697


>07_01_0214 +
           1595917-1596526,1597127-1597140,1598414-1598743,
           1598853-1598963,1599113-1599269,1603366-1603619,
           1603762-1603960,1604341-1604498
          Length = 610

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/35 (45%), Positives = 16/35 (45%)
 Frame = -1

Query: 488 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 384
           T L  H   AA    Q H HGH      G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280


>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
          Length = 1037

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 518 LQSGS*VHXQTSLIWHVDHAACQIQQLHNHGH 423
           +QSG+       LIWH+  + C+I+    H H
Sbjct: 753 IQSGAPRCSHVILIWHIATSLCEIKLAQEHDH 784


>08_01_0346 - 3063440-3064189
          Length = 249

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 338 AESLRYKLIGGLAVRRACYGVLR 406
           A S    L+GG A   ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243


>05_05_0311 -
           24004380-24004440,24004685-24004756,24004875-24004946,
           24005155-24005298,24005535-24005606,24006057-24006286
          Length = 216

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -2

Query: 178 DLRADGSDPHFHAGVAVLGQLPSEELIEFRLENPISNKFSLL*NIVHGHDCN 23
           DL       H  A +A L QL   E+    +E PI  +F  L N++    CN
Sbjct: 78  DLEEMNLSGHLSADLARLDQLQFMEIASNNIEGPIPPEFGNLENLISLDLCN 129


>01_07_0132 -
           41298184-41298558,41298648-41298729,41298850-41298977,
           41299059-41299157,41299279-41299434,41300709-41300783,
           41301962-41302137,41303210-41303252,41303336-41303503,
           41303584-41303731,41306316-41306587
          Length = 573

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/63 (23%), Positives = 29/63 (46%)
 Frame = +2

Query: 374 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATX 553
           A R A  G++  + + G  G     SG+ RGQ  +++  + G +        +Y++ A  
Sbjct: 472 AARLAAAGIVGILKKLGRDGSGAASSGRGRGQPRRTVVAIEGGLYQGYPVFREYLDEALV 531

Query: 554 HVL 562
            +L
Sbjct: 532 EIL 534


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,531,035
Number of Sequences: 37544
Number of extensions: 315106
Number of successful extensions: 806
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)