Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_F09
(566 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 281 3e-76
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr... 33 0.19
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 29 2.3
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 29 2.3
U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical pr... 28 5.4
U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical pr... 28 5.4
U53148-2|AAB37078.1| 360|Caenorhabditis elegans Hypothetical pr... 27 9.4
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 281 bits (688), Expect = 3e-76
Identities = 137/179 (76%), Positives = 154/179 (86%), Gaps = 1/179 (0%)
Frame = +2
Query: 32 MAVN-NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 208
MA N N++KK+K V G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+V
Sbjct: 1 MAANQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNV 60
Query: 209 LGEKGRRIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 388
LGE+GRRI+ELTSVVQKRF E SV LYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRA
Sbjct: 61 LGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRA 120
Query: 389 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATXHVLL 565
CYGVLRFIMESGA+G EV+VSGKLRGQRAK+MKFV GLMIHSG P NDY+ A HV L
Sbjct: 121 CYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQL 179
>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical protein
C05C10.2b protein.
Length = 1553
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 2 PSFSRLPVAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 136
P L +A +I KK F GDG F E E+ +DGY
Sbjct: 878 PDIGYLRIAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922
>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical protein
C05C10.2a protein.
Length = 1551
Score = 32.7 bits (71), Expect = 0.19
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 2 PSFSRLPVAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 136
P L +A +I KK F GDG F E E+ +DGY
Sbjct: 878 PDIGYLRIAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 119 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 280
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 119 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 280
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +2
Query: 197 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVXLYAEKVATR 316
+ S+ G+KG+ +REL + + K ++ E++ + AE A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435
>U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical
protein T13C2.6a protein.
Length = 909
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 195 GHRVCSERKDAESVS*LP*YRSDSTFQSNLXNCMLKRWL 311
G R C+ KD ++ + D+ FQ + NC+ K W+
Sbjct: 146 GQRDCTNGKDEQNCTSKTSKCPDNNFQCSNGNCIFKNWV 184
>U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical
protein T13C2.6b protein.
Length = 911
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 195 GHRVCSERKDAESVS*LP*YRSDSTFQSNLXNCMLKRWL 311
G R C+ KD ++ + D+ FQ + NC+ K W+
Sbjct: 148 GQRDCTNGKDEQNCTSKTSKCPDNNFQCSNGNCIFKNWV 186
>U53148-2|AAB37078.1| 360|Caenorhabditis elegans Hypothetical
protein C26F1.6 protein.
Length = 360
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +3
Query: 354 TSLSEVSLYVVLAMVFSVSSWNLVPVVVKLLYLASC 461
T++ V LY V M SVS W LV + + YLA C
Sbjct: 77 TAMIMVYLYPVTIMFQSVSVWLLVSITID-RYLAVC 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,765,724
Number of Sequences: 27780
Number of extensions: 253071
Number of successful extensions: 718
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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