Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_F05
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 139 3e-34
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 139 4e-34
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 29 0.58
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy... 25 7.2
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 25 9.5
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 9.5
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 139 bits (337), Expect = 3e-34
Identities = 75/123 (60%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
Frame = +2
Query: 236 RAVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQXIPXL 415
+ VL RVRLL+ GH CYRPRRDGERKRKSVRGCIV +L+VLAL IV++G Q IP L
Sbjct: 65 QGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGL 124
Query: 416 TDGNVPRRLGPKRASKIRKLFNLS-XXXXXXXXXXXXXLPAXEGKENAKPRHNAPXIQRL 592
TD VP+RLGPKRASKIR+ FNLS +P EGK KP AP IQRL
Sbjct: 125 TDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRL 181
Query: 593 VTP 601
VTP
Sbjct: 182 VTP 184
Score = 98.3 bits (234), Expect = 8e-22
Identities = 42/66 (63%), Positives = 51/66 (77%)
Frame = +1
Query: 43 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 222
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 223 FPMKQG 240
FPM QG
Sbjct: 61 FPMFQG 66
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 139 bits (336), Expect = 4e-34
Identities = 74/123 (60%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
Frame = +2
Query: 236 RAVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQXIPXL 415
+ VL RVRLL+ GH CYRPRRDGERKRKSVRGCIV +L+VLAL I+++G Q IP L
Sbjct: 65 QGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGL 124
Query: 416 TDGNVPRRLGPKRASKIRKLFNLS-XXXXXXXXXXXXXLPAXEGKENAKPRHNAPXIQRL 592
TD VP+RLGPKRASKIR+ FNLS +P EGK KP AP IQRL
Sbjct: 125 TDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRL 181
Query: 593 VTP 601
VTP
Sbjct: 182 VTP 184
Score = 98.3 bits (234), Expect = 8e-22
Identities = 42/66 (63%), Positives = 51/66 (77%)
Frame = +1
Query: 43 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 222
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 223 FPMKQG 240
FPM QG
Sbjct: 61 FPMFQG 66
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 29.1 bits (62), Expect = 0.58
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = -3
Query: 276 DIRRRTRLFVRTALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVKDTKLVL-- 103
+I R RLF+R ALF + V+ S T + ++ + L GA A F+ D L+
Sbjct: 468 NIERHFRLFIRLALFCVLTTYNVSLSQT-ILLTSIMSVVFLLQTGALAPFINDNPLIQSG 526
Query: 102 VHHFEQLLASRCRVRNV*LHELRSIPS 22
+ H L R RN + IP+
Sbjct: 527 MRHIRNLQDEYRRRRNRTAQRVVEIPN 553
>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 7.2
Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = -3
Query: 450 LGPRRRGTFPSVNXGIXWAPLRTITRAKTERLASTIHPRTDLRFLSPSRRGL*HEWPFD- 274
L PRR PSV+ G + + +T + ++L + ++ + L+ L P ++ P
Sbjct: 91 LAPRRTSPLPSVSAG--QSHINIVTASGAKKLTNDLYIKAVLK-LCPELVIPLNDTPTSP 147
Query: 273 --IRRRTRLFVRTALFHRESLLVVAASD 196
++R+ ++ R+ + E LL + A+D
Sbjct: 148 PGVKRKPKIVERSVNWTTELLLALKATD 175
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 25.0 bits (52), Expect = 9.5
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Frame = -2
Query: 238 PVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTS------G 77
P+SS I H H+P + D+ R C F++ +E + P + S G
Sbjct: 970 PISSNIPILSVAPFHAHHAPQGYIYVDENSFIRICKFQEDFEYDNKWPYKKVSLGKQING 1029
Query: 76 IPLPGTKRLTS*AAVNPVE 20
I TK + + + P+E
Sbjct: 1030 IAYHPTKMVYAVGSAVPIE 1048
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 63 PGNGMPEVVRSGGRAQASYLLR 128
PG+G+P +V R AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,359,287
Number of Sequences: 5004
Number of extensions: 44956
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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