Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F05
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   117   7e-27
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   117   9e-27
10_08_0456 - 18072618-18072718,18072837-18073016,18073425-180735...    29   2.4  
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201...    27   9.8  

>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  117 bits (282), Expect = 7e-27
 Identities = 67/125 (53%), Positives = 78/125 (62%), Gaps = 2/125 (1%)
 Frame = +2

Query: 236 RAVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQXIP 409
           + VLT  RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG   +P
Sbjct: 65  QGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLP 124

Query: 410 XLTDGNVPRRLGPKRASKIRKLFNLSXXXXXXXXXXXXXLPAXEGKENAKPRHNAPXIQR 589
            LTD   PR  GPKRASKIRKLFNLS                    +N K    AP IQR
Sbjct: 125 GLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFT--TKNGKKVSKAPKIQR 182

Query: 590 LVTPV 604
           LVTP+
Sbjct: 183 LVTPL 187



 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 39/66 (59%), Positives = 50/66 (75%)
 Frame = +1

Query: 43  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 222
           MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 223 FPMKQG 240
           FPMKQG
Sbjct: 61  FPMKQG 66


>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  117 bits (281), Expect = 9e-27
 Identities = 66/125 (52%), Positives = 79/125 (63%), Gaps = 2/125 (1%)
 Frame = +2

Query: 236 RAVLTNSRVRLLMSKGHSCYRP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAQXIP 409
           + VLT+ RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG   +P
Sbjct: 65  QGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLP 124

Query: 410 XLTDGNVPRRLGPKRASKIRKLFNLSXXXXXXXXXXXXXLPAXEGKENAKPRHNAPXIQR 589
            LTD   PR  GPKRASKIRKLFNL+                    +N K    AP IQR
Sbjct: 125 GLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFT--TKNGKKVSKAPKIQR 182

Query: 590 LVTPV 604
           LVTP+
Sbjct: 183 LVTPL 187



 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 40/66 (60%), Positives = 50/66 (75%)
 Frame = +1

Query: 43  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 222
           MK N++ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 223 FPMKQG 240
           FPMKQG
Sbjct: 61  FPMKQG 66


>10_08_0456 -
           18072618-18072718,18072837-18073016,18073425-18073513,
           18074381-18074547,18074880-18075800
          Length = 485

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
 Frame = -2

Query: 238 PVSS--GILACRCRQRHE--VHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIP 71
           PVS   G+   RCR+ H+    SPS+ R      L R  A  +R+   +RP         
Sbjct: 5   PVSDELGLARARCRELHDRVAASPSLQRHPALRSLLRLVAAEQRFLDSSRPDQGAPLSTN 64

Query: 70  LPGTKRLTS*AAVNPVERQPMK 5
           LP    L    A +P  R P +
Sbjct: 65  LPHLAALHLLLAAHPAVRCPSR 86


>01_07_0254 +
           42318181-42319471,42319581-42319792,42319909-42320132,
           42320232-42321009
          Length = 834

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 79  QKLF-EVVDEHKLRIFYEKRMGAEVEADQLG 168
           +KL+ E+ DE KLRI YEK+       D+ G
Sbjct: 494 KKLYQEIKDEEKLRILYEKKYRRLKSLDERG 524


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,548,379
Number of Sequences: 37544
Number of extensions: 348144
Number of successful extensions: 958
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)