Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F05
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              161   6e-40
SB_52198| Best HMM Match : Folate_rec (HMM E-Value=0)                  32   0.35 
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   30   1.4  
SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)                      29   4.3  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  161 bits (390), Expect = 6e-40
 Identities = 80/123 (65%), Positives = 90/123 (73%)
 Frame = +2

Query: 236 RAVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQXIPXL 415
           + ++TN RVRLL+SKGHSCYRPRR GERKRKSVRGCIVD+ LSVL+LVIV+KG Q IP L
Sbjct: 32  QGIMTNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKGEQDIPGL 91

Query: 416 TDGNVPRRLGPKRASKIRKLFNLSXXXXXXXXXXXXXLPAXEGKENAKPRHNAPXIQRLV 595
           TD  +PRRLGPKR  KIRK+FNLS             LP  EGK   K +  AP IQRLV
Sbjct: 92  TDNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGK---KAKSKAPKIQRLV 148

Query: 596 TPV 604
           TPV
Sbjct: 149 TPV 151



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 25/32 (78%), Positives = 27/32 (84%)
 Frame = +1

Query: 145 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQG 240
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQG 33


>SB_52198| Best HMM Match : Folate_rec (HMM E-Value=0)
          Length = 583

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 113 SLCSSTTSNNFWHPVAGYETFNFMSCGQSRRTSAXEK 3
           S CS+T +     PV G   F+++ CGQ++ +S  E+
Sbjct: 302 SCCSATFTQQLSSPVKGVGNFSWLQCGQAKLSSKCER 338


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 237 LFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 121
           L H +SL V+  SD + ++LP I   +  Y   H L ++
Sbjct: 268 LLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 914

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 196 VAGGNDKQGFPMKQGRPDKQPCSSSDVKGPLMLQ 297
           VA G D  G  +  GR  +  CS SDVKG + +Q
Sbjct: 115 VALGQDYVGLLLNDGRVCRFKCSCSDVKGSVRVQ 148


>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
          Length = 1365

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +1

Query: 151 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 234
           E D+ G EW+G+V      G  D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,745,319
Number of Sequences: 59808
Number of extensions: 382890
Number of successful extensions: 1023
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)