Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F04
         (405 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00000DA87A Cluster: hypothetical protein CT1981; n=1...    35   0.71 
UniRef50_Q0IR41 Cluster: Os11g0682600 protein; n=3; Oryza sativa...    31   8.7  

>UniRef50_UPI00000DA87A Cluster: hypothetical protein CT1981; n=1;
           Chlorobium tepidum TLS|Rep: hypothetical protein CT1981
           - Chlorobium tepidum TLS
          Length = 415

 Score = 34.7 bits (76), Expect = 0.71
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +1

Query: 169 DAWPFIXD-EIEIEIGSRQLVCIPHITEADLYKVTSLFVPNEKEINGKNFTPLG 327
           +A PF  D + E   GS  +V +PH  E D      L + +E E  G+NF+ LG
Sbjct: 205 EALPFRVDFDGENITGSNTMVLVPHFLEQDPVGCAGLNISSEIESGGENFSDLG 258


>UniRef50_Q0IR41 Cluster: Os11g0682600 protein; n=3; Oryza
           sativa|Rep: Os11g0682600 protein - Oryza sativa subsp.
           japonica (Rice)
          Length = 662

 Score = 31.1 bits (67), Expect = 8.7
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 199 EIEIGSRQLVCIPHITEADLYKVTSLFVPNEKEINGKNFTPLGR-IVKKLNKKKSMXIT* 375
           E  +GS +L+ I  + E   + +   +  +    + + + P+GR I KKLN+     +T 
Sbjct: 496 EAALGSNRLIPISDLEEEQYFSMFMHYALDSTIFDDREYIPIGRKIAKKLNRSPIAAVTV 555

Query: 376 SG 381
           +G
Sbjct: 556 AG 557


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 318,420,692
Number of Sequences: 1657284
Number of extensions: 5001267
Number of successful extensions: 10469
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10468
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 17773009086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)