Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F04
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein Bqt2|S...    26   1.9  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    25   4.5  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   5.9  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    24   7.8  
SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb...    24   7.8  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    24   7.8  

>SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein
           Bqt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 118

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 109 YSHEIRKDVRLENLKSLKLEDAWPFIXDEIEI 204
           +S  +RK VRL N KS++    W +I +++ +
Sbjct: 42  FSMHLRKHVRLPNYKSVQCRSPW-WIAEQVAV 72


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/58 (20%), Positives = 27/58 (46%)
 Frame = -2

Query: 395 SRRLPPLHVXFIDFFLFNFLTILPRGVKFLPLISFSFGTNRDVTLYKSASVMCGIHTN 222
           S R PP+ +  + F +FN    + + ++ + +  F  G      L   A+ +  +++N
Sbjct: 198 SGRKPPILIGMLGFGIFNISVAVGKDIQTIMMCRFFAGFFASAPLTVVAAALADMYSN 255


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 344 NFLTILPRGVKFLPLISFSFGTNRDVTLYKSASVMCGIHTN 222
           N+    P  V  +P  +    T +DV +Y S  V+ GIH +
Sbjct: 191 NYAVYGPETVLNVPENAQLLVTEKDVIIYSSNGVIYGIHVS 231


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 236 RTSLKLIYTKSRLCSCQTRKRLTVKTSRLSGE 331
           RT L  +  +   CS QT+ R ++KT +L  E
Sbjct: 499 RTILLHLADQMNACSLQTKSRESIKTLKLIEE 530


>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 281

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 145 NLKSLKLEDAWPFIXDEIEIEIG 213
           NLKS K E  WP I   + + +G
Sbjct: 126 NLKSWKFEPPWPAIFGFVAVILG 148


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 117 MRVKRFYNYFKLLRH 73
           MRV+R  +Y KLLRH
Sbjct: 77  MRVEREISYLKLLRH 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,389,635
Number of Sequences: 5004
Number of extensions: 23267
Number of successful extensions: 40
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)