Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F04
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0730 - 26728241-26729335,26729998-26730660                       31   0.46 
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230...    28   2.4  

>11_06_0730 - 26728241-26729335,26729998-26730660
          Length = 585

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 199 EIEIGSRQLVCIPHITEADLYKVTSLFVPNEKEINGKNFTPLGR-IVKKLNKKKSMXIT* 375
           E  +GS +L+ I  + E   + +   +  +    + + + P+GR I KKLN+     +T 
Sbjct: 438 EAALGSNRLIPISDLEEEQYFSMFMHYALDSTIFDDREYIPIGRKIAKKLNRSPIAAVTV 497

Query: 376 SG 381
           +G
Sbjct: 498 AG 499


>01_06_1556 -
           38222071-38222708,38222795-38222822,38222950-38223070,
           38223206-38223318,38223424-38223506,38223868-38223930,
           38224100-38224254,38224411-38224580,38225101-38225189,
           38225304-38225496,38225655-38225779,38226069-38226475,
           38226855-38226919,38227414-38227692,38227772-38227845,
           38228241-38228292,38228366-38228473,38228871-38228972,
           38229100-38229173,38229262-38229435,38229667-38229771,
           38229867-38229977,38230364-38230487
          Length = 1150

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 226 LTACFQ-FQSLFRLL*TATHLQVSVTSSFPILHLYESHE 113
           L AC + + S FRLL T T LQ ++   F +LH  +  E
Sbjct: 678 LAACLKRYCSEFRLLLTGTPLQNNIMELFSLLHYIDPDE 716


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,128,476
Number of Sequences: 37544
Number of extensions: 123799
Number of successful extensions: 255
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)