Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F04
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101318-5|AAC69347.1|  574|Caenorhabditis elegans Hypothetical ...    30   0.73 
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    29   1.3  
AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical ...    28   2.9  
AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical...    28   2.9  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    27   3.9  
AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine r...    27   3.9  
L10986-12|AAA28011.1|  197|Caenorhabditis elegans Hypothetical p...    26   9.0  

>AF101318-5|AAC69347.1|  574|Caenorhabditis elegans Hypothetical
           protein Y73C8C.7 protein.
          Length = 574

 Score = 29.9 bits (64), Expect = 0.73
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -2

Query: 392 RRLPPLHVXFIDFFLFNFLTI---LPRGVKFLPLISFSFGTNRDVTLYKSASVMC 237
           RR+ P     I+ F FNF      L RGV F+ L        +  TLYKS +++C
Sbjct: 98  RRMDPSQFYLIEEF-FNFFDDYFDLTRGVTFIDLKDVDEINEKMETLYKSLTILC 151


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
            protein F53H1.4a protein.
          Length = 1370

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 153  LQVFQSYIFTNLMRVK-RFYNYFKLLRHFS**ILRKINR 40
            L+ +++Y F++  R K R +NYF L  H +   L K+N+
Sbjct: 1008 LEKWKNYEFSDFFRAKCRIFNYFLLFSHKTSKFLEKLNQ 1046


>AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical
           protein C01B4.6 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 8/17 (47%), Positives = 16/17 (94%)
 Frame = -3

Query: 169 LQVSVTSSFPILHLYES 119
           +++S+T+S+P++HLY S
Sbjct: 256 IELSITTSYPVIHLYAS 272


>AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical
           protein Y19D10A.16 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 8/17 (47%), Positives = 16/17 (94%)
 Frame = -3

Query: 169 LQVSVTSSFPILHLYES 119
           +++S+T+S+P++HLY S
Sbjct: 256 IELSITTSYPVIHLYAS 272


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/67 (23%), Positives = 33/67 (49%)
 Frame = +1

Query: 118  EIRKDVRLENLKSLKLEDAWPFIXDEIEIEIGSRQLVCIPHITEADLYKVTSLFVPNEKE 297
            EI + +R  +++ + +ED W    D++   +GS+    +  I   DL     L +    +
Sbjct: 1850 EISRAMRNRSVE-IYIEDGWNLWPDDVRTVVGSKMSSELSRIVARDLTVEQQLHLAALLQ 1908

Query: 298  INGKNFT 318
             NG++F+
Sbjct: 1909 ENGEHFS 1915


>AF039053-11|AAC25879.1|  301|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 19 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -2

Query: 365 FIDFFLFNFLTILPRGVKFLPLISFSFGTNRDVTLYKSASVMCGIHTNC 219
           +I  F  N+    P  + F+  I+  +G N D+ LY   +    I  NC
Sbjct: 115 YIPIFFHNYRKRFPAVIIFM--IAVIYGLNEDIVLYVFCNFKLNIPKNC 161


>L10986-12|AAA28011.1|  197|Caenorhabditis elegans Hypothetical
           protein F10E9.1 protein.
          Length = 197

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 23  VYSYRFLFIFLKIY*LKCRRSLK 91
           VY Y F+ +FL I  L CR++++
Sbjct: 145 VYYYNFMLVFLAIQRLFCRKAVE 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,536,654
Number of Sequences: 27780
Number of extensions: 125479
Number of successful extensions: 285
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)