Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F02
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    28   1.3  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    27   1.7  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    27   2.3  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.3  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   7.0  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   9.3  

>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 436 ALRRSTQVLTPVIDLKSKSKDEXQSNSSSPKIQPKTITAP 555
           +L  +T + TP+ D+ S       SN SSP I+ K+ + P
Sbjct: 380 SLSDTTNLNTPISDIPSPGSSTTCSNLSSPHIKRKSRSPP 419


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 421 QPKR-EALRRST--QVLTPVIDLKSKSKDEXQSNSSSPKIQPKTITAPLNV 564
           QP   E+L ++T  Q+ TP+ ++K+  KD+ +    S  + P     P  V
Sbjct: 435 QPNNPESLAQTTLLQISTPISNIKANGKDDEEKKEESDLVTPSVKFKPPRV 485


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 424 PKREALRRSTQVLTPVIDLKSKSKDEXQSNSSSP 525
           PKR A  RS      ++  + KSKD   S  S+P
Sbjct: 211 PKRPAFTRSATSPDKILPTRIKSKDTVSSGDSTP 244


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 140 RKQIISFNQQSGLIILDIYVVTWLWCLYGT 229
           R  +IS  + + LII   +++ W W +YGT
Sbjct: 548 RASVIS--KVAALIITAAFIILWPWPMYGT 575


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 325  YXSRHKETSLMTGLLRFTKC 266
            Y S  KE SL+TG L+F  C
Sbjct: 1016 YASELKENSLLTGELKFGDC 1035


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +1

Query: 433 EALRRSTQVLTPVIDLKSKSKDEXQSNSSSPKIQPKTITAPLNVR 567
           E+LR   +  TP+ ++ +        NSS  K  P++ ++  N R
Sbjct: 216 ESLREKRRTYTPLSEISNGLNSNGVENSSITKSSPRSSSSSNNER 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,090
Number of Sequences: 5004
Number of extensions: 42202
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)