Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_F02
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969... 30 1.4
04_01_0022 + 324422-324445,324870-325265,325366-325546,325781-32... 29 3.1
03_05_0258 - 22442527-22443927 29 3.1
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 28 7.2
01_05_0166 + 18844468-18845184,18847394-18847690 28 7.2
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 27 9.6
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 27 9.6
08_02_1157 + 24765719-24766544,24766569-24766637,24767031-247671... 27 9.6
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 27 9.6
02_05_0300 + 27681204-27681656,27681745-27681840,27681933-276820... 27 9.6
>09_04_0497 -
18096299-18096496,18096586-18096675,18096809-18096914,
18097005-18097179,18097263-18097365,18097458-18097712,
18097791-18097868,18097986-18098078,18098179-18098319,
18098406-18098510,18098658-18098738,18098825-18098866,
18098966-18099082,18099208-18099351,18099485-18099568,
18099683-18099803,18099863-18099988,18100106-18100179,
18100388-18100657
Length = 800
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 481 KSKSKDEXQSNSSSPKIQPKTITAPLNVRDFDWNVANEYDPMWPNDYEKVAK 636
+ + K+ ++ K + KTIT + +DW +ANE P+W + ++V K
Sbjct: 315 EEEPKEGEEATEGEKKKKKKTITE----KYWDWELANETKPIWMRNPKEVEK 362
>04_01_0022 +
324422-324445,324870-325265,325366-325546,325781-326072,
326389-326461,326610-326700,326815-326894,326992-327234
Length = 459
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 210 SQVTT*MSRMMRPLCWLKLMICFLHNVIFTSFXYXYLKPQLVSSV 76
S +TT S + R W+ I FL V FT Y YL Q V S+
Sbjct: 345 SSLTT-TSMVARRYVWIYATIQFLFVVFFTHLFYRYLHLQAVISI 388
>03_05_0258 - 22442527-22443927
Length = 466
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 463 TPVIDL-KSKSKDEXQSNSSSPKIQPKTITAPLNVRDFDWNVANEYDPMWPNDYEKVA 633
TP ID+ K D+ + P++ + + L + FDW+ PM P+ + VA
Sbjct: 330 TPAIDVCKGLVGDKAVVSIYDPQVTEEQVQRDLVMNKFDWDHPRHLQPMSPSSAKHVA 387
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +1
Query: 499 EXQSNSSSPKIQPKTITAPLNVRDFDWNVANEYDPMWPNDYEKVAKE 639
E + K + K T + + +DW + NE P+W + +V+ E
Sbjct: 580 EAKEGDDETKTEVKKKTKTVVEKYWDWELTNETQPIWLRNPREVSTE 626
>01_05_0166 + 18844468-18845184,18847394-18847690
Length = 337
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 583 VANEYDPMWPNDYEKVAKE 639
V EYDP PNDYE K+
Sbjct: 61 VMEEYDPARPNDYEDYRKD 79
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 574 DWNVANEYDPMWPNDYEKVAKE 639
+WNV N+ P+W E++ KE
Sbjct: 259 EWNVMNKQKPIWLRKPEEITKE 280
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 574 DWNVANEYDPMWPNDYEKVAKE 639
+WNV N+ P+W E++ KE
Sbjct: 259 EWNVMNKQKPIWLRKPEEITKE 280
>08_02_1157 +
24765719-24766544,24766569-24766637,24767031-24767180,
24767296-24768503
Length = 750
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = -1
Query: 473 MTGVSTCVERRKASRLGCVT--AAFFSCNC 390
M G S+CVE +K S GC++ ++C C
Sbjct: 254 MLGNSSCVEAKKLSDFGCLSDNRRGYACKC 283
>08_02_1073 -
24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 475 DLKSKSKDEXQSNSSSPKIQPKTITAPLNVRDFDWNVANEYDPMWPNDYEKVAK 636
D ++K +E + K KTIT + +DW +ANE P+W +++ K
Sbjct: 566 DEEAKEGEEAKEGEQKKK---KTITE----KYWDWELANETKPIWMRSPKEIEK 612
>02_05_0300 +
27681204-27681656,27681745-27681840,27681933-27682022,
27682126-27682227,27682310-27682456,27683608-27683748,
27683749-27683808,27685133-27685230,27685308-27685410,
27685954-27686037
Length = 457
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3
Query: 366 RPCRYFFCGPCFY 328
RPCRYF G C Y
Sbjct: 112 RPCRYFLAGDCSY 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,411,700
Number of Sequences: 37544
Number of extensions: 237672
Number of successful extensions: 541
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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