Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F02
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2246| Best HMM Match : G-patch (HMM E-Value=5.5e-11)                32   0.34 
SB_32822| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)               28   5.6  
SB_28965| Best HMM Match : Ribosomal_S9 (HMM E-Value=2.1)              28   7.4  
SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_59022| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.4e-13)           27   9.8  
SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)                 27   9.8  

>SB_2246| Best HMM Match : G-patch (HMM E-Value=5.5e-11)
          Length = 396

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 10/123 (8%)
 Frame = +1

Query: 301 MSLYDDLXTIKTRTTE----KVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTP 468
           MSLYDDL  +  +++     K++ WS+ +               +P     +  +  LTP
Sbjct: 1   MSLYDDLDGVPLQSSSEDVGKLSGWSNSLKLMQTQLHRKKVIQNKPVFPTTKSKS--LTP 58

Query: 469 VI---DLKSKSKDEXQSNSSSPKIQPKTITAPLNVRDFDWNVA---NEYDPMWPNDYEKV 630
            +    L+ K   E +   +         T P    + D ++A   +EYDP+ PNDYE V
Sbjct: 59  SLLGKGLQKKLIVEEKDFGTEEISHGDLHTVPEPFIETDASLAMIEDEYDPLKPNDYE-V 117

Query: 631 AKE 639
            KE
Sbjct: 118 VKE 120


>SB_32822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1409

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
 Frame = +1

Query: 304 SLYDDLXTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDLK 483
           S  D +    + TT K +   +GI             V  P R  +   +   + V +L 
Sbjct: 500 SAVDKIDHNPSSTTAKDSFHGTGISLFQHPSAVLPGTVQAPIR--MNNDSSDKSVVRELP 557

Query: 484 SKSKDEXQSNSSSPKIQPKTITAPL--NVRDFDWNVANEY 597
           +   D    + +SP++QP     PL  N  D+  ++A+EY
Sbjct: 558 ASYTDVPAVDGTSPRMQPTASRVPLKSNEEDYHRSIADEY 597


>SB_3932| Best HMM Match : Spectrin (HMM E-Value=5.2e-17)
          Length = 1426

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +1

Query: 301 MSLYDDLXTIKTRTTEKVAAWS 366
           +SLY+D+ +++ + TEK+ AW+
Sbjct: 304 ISLYEDIQSLEAQKTEKLKAWA 325


>SB_28965| Best HMM Match : Ribosomal_S9 (HMM E-Value=2.1)
          Length = 346

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 412 AVTQPKREALR-RSTQVLTPVIDLKSKSKDEXQSNSSSPKIQPKTITAPLNV 564
           A + P+R  L+ R      P ++ KS+ + + +  S    I P+T+  PLN+
Sbjct: 158 ATSDPERPCLQTRRIATAKPSLEAKSQKELQKERQSDVRVIIPQTLNEPLNL 209


>SB_55336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 487 KSKDEXQSNSSSPKIQPKTITAPLNVRDFDWNVAN 591
           KS+ E     S P+I+PKT  +   +  F W VA+
Sbjct: 514 KSRGEEDDYYSDPEIKPKTSLSSQQLIRFAWQVAD 548


>SB_59022| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.4e-13)
          Length = 751

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 487 KSKDEXQSNSSSPKIQPKTITAPLNVRDFDWNVAN 591
           KS+ E  S    P+I+PKT  +   +  F W VA+
Sbjct: 660 KSRGEEDSYYPDPEIKPKTSLSSQQLVRFAWQVAD 694


>SB_20306| Best HMM Match : Vicilin_N (HMM E-Value=1.8)
          Length = 360

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +1

Query: 427 KREALRRSTQVLTPVIDLKSKSK-DEXQSNSSSPKIQPKT 543
           ++ +L+RS +  +P   LK+  K D  +S ++SPK  PKT
Sbjct: 118 RKTSLKRSLKT-SPKTSLKTSRKTDRKKSRNTSPKRSPKT 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,617,062
Number of Sequences: 59808
Number of extensions: 308378
Number of successful extensions: 699
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)