Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_F02
(641 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC039322-1|AAH39322.1| 401|Homo sapiens RBM17 protein protein. 66 1e-10
BC007871-1|AAH07871.1| 401|Homo sapiens RNA binding motif prote... 66 1e-10
AL157395-8|CAH73602.1| 401|Homo sapiens RNA binding motif prote... 66 1e-10
AL157395-7|CAH73601.1| 221|Homo sapiens RNA binding motif prote... 66 1e-10
AL157395-6|CAH73600.1| 212|Homo sapiens RNA binding motif prote... 66 1e-10
AF542550-1|AAQ09533.1| 401|Homo sapiens unknown protein. 66 1e-10
BC009064-1|AAH09064.1| 369|Homo sapiens RBM17 protein protein. 54 6e-07
AL157395-5|CAH73599.1| 243|Homo sapiens RNA binding motif prote... 46 2e-04
AL157395-9|CAH73603.1| 224|Homo sapiens RNA binding motif prote... 37 0.053
>BC039322-1|AAH39322.1| 401|Homo sapiens RBM17 protein protein.
Length = 401
Score = 66.1 bits (154), Expect = 1e-10
Identities = 44/116 (37%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Frame = +1
Query: 301 MSLYDDLXTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 480
MSLYDDL ++T + K WS AA+TQ K + ++ST VL PVIDL
Sbjct: 1 MSLYDDLG-VET-SDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQST-VLAPVIDL 57
Query: 481 K-SKSKDEXQSNSSSPKIQP---KTITAPLNVRDFDWNVANEYDPMWPNDYEKVAK 636
K S D+ Q + P + + + + + +A+EYDPM+PNDYEKV K
Sbjct: 58 KRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVK 113
>BC007871-1|AAH07871.1| 401|Homo sapiens RNA binding motif protein
17 protein.
Length = 401
Score = 66.1 bits (154), Expect = 1e-10
Identities = 44/116 (37%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Frame = +1
Query: 301 MSLYDDLXTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 480
MSLYDDL ++T + K WS AA+TQ K + ++ST VL PVIDL
Sbjct: 1 MSLYDDLG-VET-SDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQST-VLAPVIDL 57
Query: 481 K-SKSKDEXQSNSSSPKIQP---KTITAPLNVRDFDWNVANEYDPMWPNDYEKVAK 636
K S D+ Q + P + + + + + +A+EYDPM+PNDYEKV K
Sbjct: 58 KRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVK 113
>AL157395-8|CAH73602.1| 401|Homo sapiens RNA binding motif protein
17 protein.
Length = 401
Score = 66.1 bits (154), Expect = 1e-10
Identities = 44/116 (37%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Frame = +1
Query: 301 MSLYDDLXTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 480
MSLYDDL ++T + K WS AA+TQ K + ++ST VL PVIDL
Sbjct: 1 MSLYDDLG-VET-SDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQST-VLAPVIDL 57
Query: 481 K-SKSKDEXQSNSSSPKIQP---KTITAPLNVRDFDWNVANEYDPMWPNDYEKVAK 636
K S D+ Q + P + + + + + +A+EYDPM+PNDYEKV K
Sbjct: 58 KRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVK 113
>AL157395-7|CAH73601.1| 221|Homo sapiens RNA binding motif protein
17 protein.
Length = 221
Score = 66.1 bits (154), Expect = 1e-10
Identities = 44/116 (37%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Frame = +1
Query: 301 MSLYDDLXTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 480
MSLYDDL ++T + K WS AA+TQ K + ++ST VL PVIDL
Sbjct: 1 MSLYDDLG-VET-SDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQST-VLAPVIDL 57
Query: 481 K-SKSKDEXQSNSSSPKIQP---KTITAPLNVRDFDWNVANEYDPMWPNDYEKVAK 636
K S D+ Q + P + + + + + +A+EYDPM+PNDYEKV K
Sbjct: 58 KRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVK 113
>AL157395-6|CAH73600.1| 212|Homo sapiens RNA binding motif protein
17 protein.
Length = 212
Score = 66.1 bits (154), Expect = 1e-10
Identities = 44/116 (37%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Frame = +1
Query: 301 MSLYDDLXTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 480
MSLYDDL ++T + K WS AA+TQ K + ++ST VL PVIDL
Sbjct: 1 MSLYDDLG-VET-SDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQST-VLAPVIDL 57
Query: 481 K-SKSKDEXQSNSSSPKIQP---KTITAPLNVRDFDWNVANEYDPMWPNDYEKVAK 636
K S D+ Q + P + + + + + +A+EYDPM+PNDYEKV K
Sbjct: 58 KRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVK 113
>AF542550-1|AAQ09533.1| 401|Homo sapiens unknown protein.
Length = 401
Score = 66.1 bits (154), Expect = 1e-10
Identities = 44/116 (37%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Frame = +1
Query: 301 MSLYDDLXTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 480
MSLYDDL ++T + K WS AA+TQ K + ++ST VL PVIDL
Sbjct: 1 MSLYDDLG-VET-SDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQST-VLAPVIDL 57
Query: 481 K-SKSKDEXQSNSSSPKIQP---KTITAPLNVRDFDWNVANEYDPMWPNDYEKVAK 636
K S D+ Q + P + + + + + +A+EYDPM+PNDYEKV K
Sbjct: 58 KRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVK 113
>BC009064-1|AAH09064.1| 369|Homo sapiens RBM17 protein protein.
Length = 369
Score = 53.6 bits (123), Expect = 6e-07
Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Frame = +1
Query: 409 AAVTQPKREALRRSTQVLTPVIDLK-SKSKDEXQSNSSSPKIQP---KTITAPLNVRDFD 576
AA+TQ K + ++ST VL PVIDLK S D+ Q + P + + + + +
Sbjct: 3 AALTQAKSQRTKQST-VLAPVIDLKRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVL 61
Query: 577 WNVANEYDPMWPNDYEKVAK 636
+A+EYDPM+PNDYEKV K
Sbjct: 62 IPLADEYDPMFPNDYEKVVK 81
>AL157395-5|CAH73599.1| 243|Homo sapiens RNA binding motif protein
17 protein.
Length = 243
Score = 45.6 bits (103), Expect = 2e-04
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +1
Query: 430 REALRRSTQVLTPVIDLK-SKSKDEXQSNSSSPKIQP---KTITAPLNVRDFDWNVANEY 597
R + + VL PVIDLK S D+ Q + P + + + + + +A+EY
Sbjct: 9 RSQRTKQSTVLAPVIDLKRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEY 68
Query: 598 DPMWPNDYEKVAK 636
DPM+PNDYEKV K
Sbjct: 69 DPMFPNDYEKVVK 81
>AL157395-9|CAH73603.1| 224|Homo sapiens RNA binding motif protein
17 protein.
Length = 224
Score = 37.1 bits (82), Expect = 0.053
Identities = 14/18 (77%), Positives = 17/18 (94%)
Frame = +1
Query: 583 VANEYDPMWPNDYEKVAK 636
+A+EYDPM+PNDYEKV K
Sbjct: 2 LADEYDPMFPNDYEKVVK 19
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,541,032
Number of Sequences: 237096
Number of extensions: 1411806
Number of successful extensions: 2444
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2436
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -