Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F02
         (641 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ295864-1|ABB99954.1|  403|Drosophila melanogaster RNA binding ...    47   2e-05
AE014134-3632|EAA46008.1|  403|Drosophila melanogaster CG17540-P...    47   2e-05
BT012503-1|AAS93774.1|  363|Drosophila melanogaster AT25717p pro...    43   3e-04
AY071532-1|AAL49154.1|  379|Drosophila melanogaster RE57542p pro...    43   3e-04
AE014134-3634|EAA46009.2|  363|Drosophila melanogaster CG17540-P...    43   4e-04
BT012461-1|AAS93732.1|  371|Drosophila melanogaster RE44883p pro...    40   0.003
AE014134-3633|EAA46010.2|  371|Drosophila melanogaster CG17540-P...    40   0.003

>DQ295864-1|ABB99954.1|  403|Drosophila melanogaster RNA binding
           motif protein 17 protein.
          Length = 403

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 9/122 (7%)
 Frame = +1

Query: 301 MSLYDDLXTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 480
           M LYD + T + R+++ +  WSSGI           A V +P          ++TPV++L
Sbjct: 1   MDLYDGIDT-RARSSQ-IDGWSSGIKMLQTQLAVKMA-VKKP----------LMTPVVNL 47

Query: 481 KSKSKDEXQSNS--------SSPKIQPKTITAPLN-VRDFDWNVANEYDPMWPNDYEKVA 633
           +SK   + +           S P I  K + + L  +   DW+VA+EYDP  PN+YEK+ 
Sbjct: 48  RSKRLADPEVTCFAPITTVVSKPLISGKALPSILERINRGDWDVADEYDPQRPNEYEKLK 107

Query: 634 KE 639
           ++
Sbjct: 108 EK 109


>AE014134-3632|EAA46008.1|  403|Drosophila melanogaster CG17540-PA,
           isoform A protein.
          Length = 403

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 9/122 (7%)
 Frame = +1

Query: 301 MSLYDDLXTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 480
           M LYD + T + R+++ +  WSSGI           A V +P          ++TPV++L
Sbjct: 1   MDLYDGIDT-RARSSQ-IDGWSSGIKMLQTQLAVKMA-VKKP----------LMTPVVNL 47

Query: 481 KSKSKDEXQSNS--------SSPKIQPKTITAPLN-VRDFDWNVANEYDPMWPNDYEKVA 633
           +SK   + +           S P I  K + + L  +   DW+VA+EYDP  PN+YEK+ 
Sbjct: 48  RSKRLADPEVTCFAPITTVVSKPLISGKALPSILERINRGDWDVADEYDPQRPNEYEKLK 107

Query: 634 KE 639
           ++
Sbjct: 108 EK 109


>BT012503-1|AAS93774.1|  363|Drosophila melanogaster AT25717p
           protein.
          Length = 363

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 9/69 (13%)
 Frame = +1

Query: 460 LTPVIDLKSKSKDEXQSNS--------SSPKIQPKTITAPL-NVRDFDWNVANEYDPMWP 612
           +TPV++L+SK   + +           S P I  K + + L ++   DW+VA+EYDP  P
Sbjct: 1   MTPVVNLRSKRLADPEVTCFAPITTVVSKPLISGKALPSILESINRGDWDVADEYDPQRP 60

Query: 613 NDYEKVAKE 639
           N+YEK+ ++
Sbjct: 61  NEYEKLKEK 69


>AY071532-1|AAL49154.1|  379|Drosophila melanogaster RE57542p
           protein.
          Length = 379

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
 Frame = +1

Query: 457 VLTPVIDLKSKSKDEXQSNS--------SSPKIQPKTITAPLN-VRDFDWNVANEYDPMW 609
           ++TPV++L+SK   + +           S P I  K + + L  +   DW+VA+EYDP  
Sbjct: 16  LMTPVVNLRSKRLADPEVTCFAPITTVVSKPLISGKALPSILERINRGDWDVADEYDPQR 75

Query: 610 PNDYEKVAKE 639
           PN+YEK+ ++
Sbjct: 76  PNEYEKLKEK 85


>AE014134-3634|EAA46009.2|  363|Drosophila melanogaster CG17540-PC,
           isoform C protein.
          Length = 363

 Score = 42.7 bits (96), Expect = 4e-04
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
 Frame = +1

Query: 460 LTPVIDLKSKSKDEXQSNS--------SSPKIQPKTITAPLN-VRDFDWNVANEYDPMWP 612
           +TPV++L+SK   + +           S P I  K + + L  +   DW+VA+EYDP  P
Sbjct: 1   MTPVVNLRSKRLADPEVTCFAPITTVVSKPLISGKALPSILERINRGDWDVADEYDPQRP 60

Query: 613 NDYEKVAKE 639
           N+YEK+ ++
Sbjct: 61  NEYEKLKEK 69


>BT012461-1|AAS93732.1|  371|Drosophila melanogaster RE44883p
           protein.
          Length = 371

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +1

Query: 517 SSPKIQPKTITAPLN-VRDFDWNVANEYDPMWPNDYEKVAKE 639
           S P I  K + + L  +   DW+VA+EYDP  PN+YEK+ ++
Sbjct: 36  SKPLISGKALPSILERINRGDWDVADEYDPQRPNEYEKLKEK 77


>AE014134-3633|EAA46010.2|  371|Drosophila melanogaster CG17540-PB,
           isoform B protein.
          Length = 371

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +1

Query: 517 SSPKIQPKTITAPLN-VRDFDWNVANEYDPMWPNDYEKVAKE 639
           S P I  K + + L  +   DW+VA+EYDP  PN+YEK+ ++
Sbjct: 36  SKPLISGKALPSILERINRGDWDVADEYDPQRPNEYEKLKEK 77


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,246,595
Number of Sequences: 53049
Number of extensions: 453202
Number of successful extensions: 1363
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2703623850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)