Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F02
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73427-7|CAA97799.1|  371|Caenorhabditis elegans Hypothetical pr...    33   0.13 
AL034393-26|CAI59121.1|  936|Caenorhabditis elegans Hypothetical...    30   1.2  
AL034393-25|CAI59120.1|  797|Caenorhabditis elegans Hypothetical...    30   1.2  
AL034393-24|CAA22312.3|  833|Caenorhabditis elegans Hypothetical...    30   1.2  
Z81531-6|CAB04317.2|  330|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z83216-6|CAB62783.1|  534|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AC024090-3|AAK67220.3|  370|Caenorhabditis elegans Hypothetical ...    28   6.5  
Z81127-1|CAB03386.1|  325|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z81084-3|CAB03108.1|  174|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z68227-4|CAA92518.1|  480|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z68227-3|CAA92519.1|  507|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF440506-1|AAL34094.1|  174|Caenorhabditis elegans SKR-2 protein.      27   8.6  
AC024090-4|AAK67221.1|  300|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z73427-7|CAA97799.1|  371|Caenorhabditis elegans Hypothetical
           protein F58B3.7 protein.
          Length = 371

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 448 STQVLTPVIDLKSKSKDEXQSNSSSPKIQ--PKTITAPLNVRDFDWNVANEYDPMWPNDY 621
           ST+  T    + SKS    ++N  S  I   PK  T    +   + +V  EY PM PN+Y
Sbjct: 63  STRNRTITTAVTSKSFQPIRANPVSDNISFLPKAATDESVMLFGEEHVKCEYYPMTPNNY 122

Query: 622 EKVAKE 639
           E VAKE
Sbjct: 123 EVVAKE 128


>AL034393-26|CAI59121.1|  936|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7c protein.
          Length = 936

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 577 WNVANEYDPMWPNDYEKV 630
           WN+A+EYD MWP   + +
Sbjct: 750 WNIADEYDIMWPQTMQDI 767


>AL034393-25|CAI59120.1|  797|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7b protein.
          Length = 797

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 577 WNVANEYDPMWPNDYEKV 630
           WN+A+EYD MWP   + +
Sbjct: 734 WNIADEYDIMWPQTMQDI 751


>AL034393-24|CAA22312.3|  833|Caenorhabditis elegans Hypothetical
           protein Y18D10A.7a protein.
          Length = 833

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 577 WNVANEYDPMWPNDYEKV 630
           WN+A+EYD MWP   + +
Sbjct: 750 WNIADEYDIMWPQTMQDI 767


>Z81531-6|CAB04317.2|  330|Caenorhabditis elegans Hypothetical
           protein F36D3.6 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 383 YSHSYN*KKQQLHNLNEKPCVVP 451
           YS S+N ++Q+L+ L E PC+ P
Sbjct: 156 YSDSFNYEEQRLYILKEYPCIPP 178


>Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical
           protein F07H5.8 protein.
          Length = 872

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 461 STCVERRKASRLGCVTAAFFSCNCDCSNLIPEDHAATFSV 342
           ++CV++   S   C TA   SC   C  ++ E    TF +
Sbjct: 750 TSCVQQNSQSVPQCSTACTDSCRSSCVEIVKESAEPTFKL 789


>Z83216-6|CAB62783.1|  534|Caenorhabditis elegans Hypothetical
           protein C08F11.8 protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 457 VLTPVIDLKSKSKDEXQSNSSSPKIQP 537
           VL PVID K ++K   +S  +  KIQP
Sbjct: 57  VLMPVIDFKQENKTAMKSTKNIIKIQP 83


>AC024090-3|AAK67220.3|  370|Caenorhabditis elegans Hypothetical
           protein C52E2.6 protein.
          Length = 370

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 222 MEHIIDFNSLMLMITHFVKRSNPVIKDVSL*RLXYDKNTDHRK 350
           +EH    + L L I HF+  SNP +++  +  L  D   D+++
Sbjct: 240 IEHPFTLSDLNLFIKHFINGSNPRLEEAHI-ALAGDNKEDYKE 281


>Z81127-1|CAB03386.1|  325|Caenorhabditis elegans Hypothetical
           protein T22G5.1 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 538 KTITAPLNVRDFDWNVANEYDPMWPNDYEKV 630
           KT  A  N+    W   N+Y+ +W  DY KV
Sbjct: 283 KTDAAANNIYLAGWTSNNQYEQVWLRDYLKV 313


>Z81084-3|CAB03108.1|  174|Caenorhabditis elegans Hypothetical
           protein F46A9.4 protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +1

Query: 430 REALRRSTQVLTPVIDLKSKSKDEXQSNSSSPKIQPKTITAPLNVRDFDWNVANEYDPMW 609
           R  +R S  + T ++DL     D+ +  ++ P I  + +TA +  +  +W   ++ DP+ 
Sbjct: 30  RNVIRLSNTLNTLLVDL---GLDDDEGTNAEP-IPVQNVTASILKKVINWCTKHQSDPIP 85

Query: 610 PNDYEK 627
             D EK
Sbjct: 86  TEDSEK 91


>Z68227-4|CAA92518.1|  480|Caenorhabditis elegans Hypothetical
           protein F49C12.5b protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 265 VIININELKSIMCSIQAPKPSNH-INVENDETTLLVKT 155
           ++++IN +KS     Q P P    I+ END T+++VKT
Sbjct: 41  LVMSINLVKSPNELAQHPNPPELVISAENDTTSIMVKT 78


>Z68227-3|CAA92519.1|  507|Caenorhabditis elegans Hypothetical
           protein F49C12.5a protein.
          Length = 507

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = -2

Query: 265 VIININELKSIMCSIQAPKPSNH-INVENDETTLLVKT 155
           ++++IN +KS     Q P P    I+ END T+++VKT
Sbjct: 68  LVMSINLVKSPNELAQHPNPPELVISAENDTTSIMVKT 105


>AF440506-1|AAL34094.1|  174|Caenorhabditis elegans SKR-2 protein.
          Length = 174

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/66 (25%), Positives = 33/66 (50%)
 Frame = +1

Query: 430 REALRRSTQVLTPVIDLKSKSKDEXQSNSSSPKIQPKTITAPLNVRDFDWNVANEYDPMW 609
           R  +R S  + T ++DL     D+ +  ++ P I  + +TA +  +  +W   ++ DP+ 
Sbjct: 30  RNVIRLSNTLNTLLVDL---GLDDDEGTNAEP-IPVQNVTASILKKVINWCTKHQSDPIP 85

Query: 610 PNDYEK 627
             D EK
Sbjct: 86  TEDSEK 91


>AC024090-4|AAK67221.1|  300|Caenorhabditis elegans Hypothetical
           protein C52E2.7 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +3

Query: 240 FNSLMLMITHFVKRSNPVIKDVSL 311
           F++L L + HF+  SNP +K++++
Sbjct: 204 FSNLNLFLRHFINGSNPSLKEMNI 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,170,946
Number of Sequences: 27780
Number of extensions: 237929
Number of successful extensions: 657
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)