Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_F02
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   2.5  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   4.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   4.4  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.4  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 23  HKHYYATLIF*TKPKSC 73
           ++HYYA + F   P+SC
Sbjct: 472 NRHYYAFVPFSAGPRSC 488


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +1

Query: 163 PAKWSHHSRHLCGYLALVLV-WNT 231
           P KW H  +  C  LA+  + WN+
Sbjct: 490 PGKWPHEDKRGCYQLAINHIRWNS 513


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +1

Query: 163 PAKWSHHSRHLCGYLALVLV-WNT 231
           P KW H  +  C  LA+  + WN+
Sbjct: 580 PGKWPHEDKRGCYQLAINHIRWNS 603


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 481 KSKSKDEXQSNSSS-PKIQPKTIT--APLNVRDFDWNVANEYDPMWPNDYEKVAK 636
           K +S+D  +  +S  PKI           N  +++ N  N Y+  + N+Y+K+ K
Sbjct: 64  KERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYK 118


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 481 KSKSKDEXQSNSSS-PKIQPKTIT--APLNVRDFDWNVANEYDPMWPNDYEKVAK 636
           K +S+D  +  +S  PKI           N  +++ N  N Y+  + N+Y+K+ K
Sbjct: 64  KERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYK 118


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 198 WLLGFGACMEHIIDFNSLMLMITHFVKRSNPVI 296
           WL+ +G     +   +SL+ +  H  +R NP I
Sbjct: 285 WLVNWGEQWGFLPSKDSLVFVDNHDTQRDNPQI 317


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,907
Number of Sequences: 438
Number of extensions: 2825
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)