Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_E21
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 163 2e-41
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 163 2e-41
SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual 27 2.3
SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces p... 25 7.0
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb... 25 9.2
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ... 25 9.2
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 9.2
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 163 bits (396), Expect = 2e-41
Identities = 77/165 (46%), Positives = 103/165 (62%)
Frame = +2
Query: 143 LVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYA 322
+ Q KNKYN PKYRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYG+K GL N+
Sbjct: 37 IAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWT 96
Query: 323 AAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPXAFXCYLDVGLARTTTG 502
AAY+TG E +++GP F +LDVGL RT+TG
Sbjct: 97 AAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTG 156
Query: 503 ARVFGAMKGAVDGGLNVPHSIKRFPXYDAXSKKFNAEVHRAHIFG 637
+RVFGAMKGA DGGL +PHS RFP +D +++ + E R +I+G
Sbjct: 157 SRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYG 201
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 97 RRREGKTDYYARKRLACSGQEQ 162
RRREGKTDYYARKRL + +
Sbjct: 22 RRREGKTDYYARKRLIAQAKNK 43
Score = 29.9 bits (64), Expect = 0.32
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 33 MGFVKVVKNKQYFKRYQVKF 92
M F+K VK+ YF RYQ K+
Sbjct: 1 MPFIKAVKSSPYFSRYQTKY 20
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 163 bits (396), Expect = 2e-41
Identities = 77/165 (46%), Positives = 103/165 (62%)
Frame = +2
Query: 143 LVQDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYA 322
+ Q KNKYN PKYRL+VR SN+ VTCQ+ SR+ GD+++ A+S ELPRYG+K GL N+
Sbjct: 37 IAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWT 96
Query: 323 AAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPXAFXCYLDVGLARTTTG 502
AAY+TG E +++GP F +LDVGL RT+TG
Sbjct: 97 AAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTG 156
Query: 503 ARVFGAMKGAVDGGLNVPHSIKRFPXYDAXSKKFNAEVHRAHIFG 637
+RVFGAMKGA DGGL +PHS RFP +D +++ + E R +I+G
Sbjct: 157 SRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYG 201
Score = 36.3 bits (80), Expect = 0.004
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 97 RRREGKTDYYARKRLACSGQEQ 162
RRREGKTDYYARKRL + +
Sbjct: 22 RRREGKTDYYARKRLIAQAKNK 43
Score = 29.9 bits (64), Expect = 0.32
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 33 MGFVKVVKNKQYFKRYQVKF 92
M F+K VK+ YF RYQ K+
Sbjct: 1 MPFIKAVKSSPYFSRYQTKY 20
>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 365 EAVFVLIADQLNMLQHNLSDQPSHHNVATHV 273
EAV + + D + L +LSD+ S+ ++A H+
Sbjct: 169 EAVVLRVIDPSSKLAEDLSDEQSYRSLAEHI 199
>SPBC1271.11 |||tricarboxylate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 542 GLNVPHSIKRFPXYDAXSKKFNAEVHRAHIFG 637
G NVP + +F Y+ KKF+A H+FG
Sbjct: 141 GRNVPATAFQFVLYEQFKKKFSA---TDHVFG 169
>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 86 KIQRGVVKGKLIIMLVNASLVQDKNKYNTPKYRLIVRLSNKDV 214
K+ V K L+ + ++L +D N NT K+R+ + L +K +
Sbjct: 154 KMMSTVEKDILVRSFLLSNLKKDSNNSNTFKFRVPIELISKSL 196
>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 9.2
Identities = 10/41 (24%), Positives = 19/41 (46%)
Frame = +2
Query: 203 NKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 325
N+D + + D VC +++ + YG + G +Y A
Sbjct: 231 NRDSWALNEFVKYNKDFFVCQSFAKNMGLYGERTGCMHYVA 271
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = -2
Query: 119 SVFPSRRLVEFYLVPLEVLFVLHNFNESHIL 27
S+F ++ + +FY+ L LFV++ + ESH++
Sbjct: 792 SLFQNQDVQQFYMHSLRSLFVVY-YYESHLM 821
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,514
Number of Sequences: 5004
Number of extensions: 48348
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -