Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E21
         (639 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   171   3e-43
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   171   3e-43

>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  171 bits (417), Expect = 3e-43
 Identities = 81/163 (49%), Positives = 106/163 (65%)
 Frame = +2

Query: 149 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 328
           QDKNKYNTPKYR +VR +NKD+  Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAA
Sbjct: 39  QDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAA 98

Query: 329 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPXAFXCYLDVGLARTTTGAR 508
           Y TG                          +++VEP D+    F   LDVGL RTTTG R
Sbjct: 99  YCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDS-RRPFRALLDVGLIRTTTGNR 157

Query: 509 VFGAMKGAVDGGLNVPHSIKRFPXYDAXSKKFNAEVHRAHIFG 637
           VFGA+KGA+DGGL++PHS KRF  +   +K+ +AE+HR +I+G
Sbjct: 158 VFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYG 200



 Score = 31.5 bits (68), Expect = 0.49
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = +3

Query: 33 MGFVKVVKNKQYFKRYQVKF 92
          M FVK  K+  YFKRYQVKF
Sbjct: 1  MVFVKSSKSNAYFKRYQVKF 20



 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +1

Query: 97  RRREGKTDYYARKRL 141
           RRR+GKTDY AR RL
Sbjct: 22  RRRDGKTDYRARIRL 36


>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  171 bits (417), Expect = 3e-43
 Identities = 81/163 (49%), Positives = 106/163 (65%)
 Frame = +2

Query: 149 QDKNKYNTPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAA 328
           QDKNKYNTPKYR +VR +NKD+  Q+  + I GD +  +AY+HELP+YG+ VGLTNYAAA
Sbjct: 39  QDKNKYNTPKYRFVVRFTNKDIVAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAA 98

Query: 329 YSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVDNGPXAFXCYLDVGLARTTTGAR 508
           Y TG                          +++VEP D+    F   LDVGL RTTTG R
Sbjct: 99  YCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTDS-RRPFRALLDVGLIRTTTGNR 157

Query: 509 VFGAMKGAVDGGLNVPHSIKRFPXYDAXSKKFNAEVHRAHIFG 637
           VFGA+KGA+DGGL++PHS KRF  +   +K+ +AE+HR +I+G
Sbjct: 158 VFGALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYG 200



 Score = 32.3 bits (70), Expect = 0.28
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = +3

Query: 33 MGFVKVVKNKQYFKRYQVKF 92
          M FVK  K+  YFKRYQVKF
Sbjct: 1  MVFVKSTKSNAYFKRYQVKF 20



 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +1

Query: 97  RRREGKTDYYARKRL 141
           RRR+GKTDY AR RL
Sbjct: 22  RRRDGKTDYRARIRL 36


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,028,542
Number of Sequences: 28952
Number of extensions: 251540
Number of successful extensions: 570
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)