Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_E20
(378 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces p... 41 7e-05
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 29 0.24
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 29 0.32
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 27 0.98
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 25 3.9
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 25 5.2
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 5.2
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 5.2
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 24 6.9
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 24 9.1
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 24 9.1
>SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 71
Score = 40.7 bits (91), Expect = 7e-05
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
Frame = +1
Query: 154 KNFPRQNWGTEDA--DDEXVSVWEDNWED-DVIQDDFNQQLRQQLEK 285
++F +NW +D D ++WE+NW+D D+ DDF+ QL+ +L+K
Sbjct: 19 EDFATENWPMKDTELDTGDDTLWENNWDDEDIGDDDFSVQLQAELKK 65
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 29.1 bits (62), Expect = 0.24
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +1
Query: 154 KNFPRQNWGTEDADDEXVSVWEDNWEDDVIQDDFNQQLRQQLEKLK 291
KN R+ E +DDE +S ++ ED+ I ++ N + R+ +K +
Sbjct: 274 KNIEREEEAEETSDDEPLSSEDEENEDEDITEESNLRKRKVSDKTR 319
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 28.7 bits (61), Expect = 0.32
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 163 PRQNWGTEDADDEXVSVWEDNWEDDVIQDDFNQQ-LRQQLEKL 288
P++N + D + VS+ DN DV QD FN++ ++Q++ L
Sbjct: 378 PQEN-SAQIYDGKDVSMVNDNMHSDVRQDSFNKESIKQRIPSL 419
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 27.1 bits (57), Expect = 0.98
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 199 EXVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQ 297
+ +S+W + D + D F Q+++ + E LKD+
Sbjct: 162 DKLSIWTETDMSDRVTDAFKQKMQFEAELLKDE 194
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.0 bits (52), Expect = 3.9
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = +1
Query: 175 WGTEDADDEXVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 300
W ++ + SVW + +D + + + +LEKL D++
Sbjct: 537 WKIKNGSIDDFSVWRSAFANDALDRLLEKVILPKLEKLMDEE 578
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 24.6 bits (51), Expect = 5.2
Identities = 10/51 (19%), Positives = 27/51 (52%)
Frame = +1
Query: 148 SSKNFPRQNWGTEDADDEXVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 300
S + ++ E++DD+ + + EDDV ++ + + +Q + K+++
Sbjct: 716 SQNDVSEDDFENEESDDDKIFEQQTKIEDDVKNENKTEPVEEQKSEEKNEQ 766
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 24.6 bits (51), Expect = 5.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 238 RRLPSCLPKPIHXHHQRLLYPN 173
R+ L + IH HH+RLL+PN
Sbjct: 64 RKQAIILAREIH-HHRRLLHPN 84
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.6 bits (51), Expect = 5.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 148 SSKNFPRQNWGTEDADDEXVSVWEDNWEDDVIQDD 252
+SKN P Q D D + +ED +ED++ ++
Sbjct: 13 NSKNGPGQRGTVADNVDTEMGEFEDAYEDEIESEE 47
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 24.2 bits (50), Expect = 6.9
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 181 TEDADDEXVSVWEDNWEDD-VIQDDF 255
T +A E + W+DN ED+ ++ DF
Sbjct: 35 TNEAQREEIITWKDNREDEGEVKTDF 60
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 23.8 bits (49), Expect = 9.1
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 214 WEDNWEDDVIQDDFNQQLRQQLEKLKDQKS 303
W+++W++ V QD Q + L+ K+ K+
Sbjct: 43 WKNSWDEWVEQDRILQWTEENLKTQKELKN 72
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 23.8 bits (49), Expect = 9.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 130 CXKRMTSSKNFPRQNWGTED 189
C KR++ S NF N G +D
Sbjct: 287 CGKRLSPSSNFDLNNLGGDD 306
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,095,611
Number of Sequences: 5004
Number of extensions: 16193
Number of successful extensions: 60
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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