Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_E20
(378 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1186 - 9440805-9440938,9442890-9442986 54 3e-08
01_03_0048 + 11953517-11953681,11954603-11954669,11954894-11955024 50 5e-07
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200... 27 3.7
06_01_0692 - 5047162-5047441,5047602-5047726,5048257-5048327,504... 27 4.9
04_04_1689 + 35379627-35379746,35379823-35380344,35380428-353805... 27 4.9
04_01_0299 - 3995709-3996185,3996209-3997075,3997142-3997252,399... 27 4.9
01_01_0561 + 4122751-4123140,4124226-4124484,4124639-4124985 27 6.5
12_01_0243 + 1816725-1816883,1816992-1817114,1817227-1817313,181... 26 8.6
07_03_1325 + 25830838-25831440 26 8.6
06_01_0144 + 1089090-1091390 26 8.6
>01_01_1186 - 9440805-9440938,9442890-9442986
Length = 76
Score = 54.4 bits (125), Expect = 3e-08
Identities = 20/44 (45%), Positives = 30/44 (68%)
Frame = +1
Query: 169 QNWGTEDADDEXVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQK 300
Q W ++ DE + WED+W+DD + DDF+ QLR++LE+ QK
Sbjct: 32 QEWDDKEDGDEAIQQWEDDWDDDDVNDDFSLQLRKELEECNTQK 75
>01_03_0048 + 11953517-11953681,11954603-11954669,11954894-11955024
Length = 120
Score = 50.4 bits (115), Expect = 5e-07
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +1
Query: 157 NFPRQNWGTEDADDEXVSVWEDNWEDDVIQDDFNQQLRQQLEKL 288
+F W ++ +E V WED+W+DD + DDF+ QLR++LE +
Sbjct: 73 SFSSDEWDDKEEGNEAVQQWEDDWDDDDVNDDFSLQLRKELESI 116
>04_01_0178 +
2006369-2006494,2006582-2006664,2007693-2007819,
2008579-2008638,2009606-2009735,2009821-2010047,
2010226-2010318,2010395-2010466,2011392-2011532,
2012045-2012047,2012387-2012443,2012909-2012995,
2013081-2013116
Length = 413
Score = 27.5 bits (58), Expect = 3.7
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 184 EDADDEXVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQKS 303
E E WE +W D Q D ++L QL+ K K+
Sbjct: 176 EPIGGEITIAWESSWMDKAPQTDMERRLMDQLKDGKFAKN 215
>06_01_0692 -
5047162-5047441,5047602-5047726,5048257-5048327,
5048453-5048834,5049389-5050126
Length = 531
Score = 27.1 bits (57), Expect = 4.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 181 TEDADDEXVSVWEDNWEDDVIQDDFNQQLRQQLEKL 288
+ ++DDE W DD+I D +++ Q+ E+L
Sbjct: 69 SNNSDDEAHQFWRKQLPDDIIPDFSFEKIEQEPEEL 104
>04_04_1689 +
35379627-35379746,35379823-35380344,35380428-35380526,
35380608-35380979
Length = 370
Score = 27.1 bits (57), Expect = 4.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 175 WGTEDADDEXVSVWEDNWEDD 237
WGT+D DD+ E++ EDD
Sbjct: 328 WGTDDDDDDQQPAEEEDEEDD 348
>04_01_0299 -
3995709-3996185,3996209-3997075,3997142-3997252,
3997535-3997888
Length = 602
Score = 27.1 bits (57), Expect = 4.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 100 HYTVMIIEIRKYHVNVARINKMQVTT 23
H+ I EI+K H+NV ++ +QV T
Sbjct: 399 HFARFIEEIQKIHINVPLLDAIQVPT 424
>01_01_0561 + 4122751-4123140,4124226-4124484,4124639-4124985
Length = 331
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 163 PRQNWGTEDADDEXVSVWEDNWEDDVIQDDFNQQLRQQLEKLKDQ 297
PR WGT DD E++ +DD + +++ + E L D+
Sbjct: 99 PRPVWGTGHGDDGAKEEDEED-DDDAVHAALQEEVESEDEDLDDE 142
>12_01_0243 +
1816725-1816883,1816992-1817114,1817227-1817313,
1817442-1817546,1817744-1817905,1818473-1818508,
1818637-1818708,1819285-1819562,1820275-1820509
Length = 418
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 184 EDADDEXVSVWEDNWEDDVIQDDFNQQL 267
EDA++E W+D W+DD + N++L
Sbjct: 388 EDAEEEKARAWDD-WKDDNPRGAGNKKL 414
>07_03_1325 + 25830838-25831440
Length = 200
Score = 26.2 bits (55), Expect = 8.6
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +1
Query: 184 EDADDEXVSVWEDNWEDDVIQD 249
+DAD+E + W++++ D++ QD
Sbjct: 114 DDADEEDLKEWDEDFVDELDQD 135
>06_01_0144 + 1089090-1091390
Length = 766
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/47 (23%), Positives = 21/47 (44%)
Frame = -1
Query: 234 VFPVVFPNRYXFIISVFCTPILPREILRTRHPLXANARXTFCLSAIT 94
V PVV + Y F+++ C P++ + L N + ++T
Sbjct: 355 VLPVVLASPYFFVVNYLCFPVVVFGLCVMTIVLCGNGNVLYAFKSLT 401
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,686,717
Number of Sequences: 37544
Number of extensions: 98868
Number of successful extensions: 375
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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