Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E19
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    27   1.5  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   3.4  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   4.5  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   4.5  

>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +3

Query: 408 EDLTDFSWTRELLWHNLIELFG-TGISLFN---IIGLKQRLSKFLKYVWWNKPVHTFXQP 575
           E+  D+S     LWH L+E FG  G+++     ++GL      F+     N  +H    P
Sbjct: 88  EESIDYSIVSASLWHMLVEWFGLEGLAIERKVLLVGLAAEQKPFVDIYPINFTLHVLFDP 147


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +3

Query: 114 KKYTFGQEILSVQYSTLNFTKSKLCW 191
           K YTFG  IL     T  F K KL W
Sbjct: 485 KNYTFGSYILGRTIGTGEFGKVKLGW 510


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = +3

Query: 93  STHSVYDKKYTFGQEILSVQYSTLNFTKSKLCWYYGYTIGLKYLKERGIFSLTSNTKVQN 272
           ST  + +K Y  G+EI   ++STL +              +  LKE    S T NTK   
Sbjct: 631 STFDMLEKLYEIGREIDMSKFSTLKYNLQ--------LPNVDLLKESEAVSETKNTKNNT 682

Query: 273 FI 278
           FI
Sbjct: 683 FI 684


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
 Frame = +3

Query: 60   LTYKHFRGHGFSTHSVYDKKYTFGQEILSVQYSTLN----FTKSKLCWYYGYTIGLKYLK 227
            LT+K      FS +   + +  + + +L V Y+TLN      K  L    G+  GL  L 
Sbjct: 1280 LTWKAITTTKFSIYEDSNGEMAYYRPLLHVLYNTLNRLLSEEKENLSLSVGFVSGLLQLC 1339

Query: 228  ERGIFSLTSNTKVQNFIQNVXKIXLLSEV 314
             R +  L     +   I+    I LL+ +
Sbjct: 1340 HRKLSQLFEKAVINPTIEVYGDIVLLNSL 1368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,236,683
Number of Sequences: 5004
Number of extensions: 43791
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)