Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E16
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    28   0.71 
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    27   1.6  
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    26   2.9  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    26   2.9  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    25   8.8  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   8.8  

>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 433 WRKCCAITKTV*RIWIVIANI*ADNYF 353
           W  CC  T  V  IWIV+  +   NY+
Sbjct: 346 WATCCIFTSFVFWIWIVLPGLYYQNYW 372


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 89  ELVEKFYTYLFEDFLLEIYIKCP 21
           E++EKF+   +E  +L+++IK P
Sbjct: 325 EIIEKFHAIAYEGSILQLFIKQP 347


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 263 VLENEXVKEIQEQVLAN-LEKPNLPNVNVPXKIIV 364
           V  N  +KE++E ++AN +  P  PN   P  + V
Sbjct: 87  VFTNADLKEVRETIIANVIAAPARPNAIAPLDVFV 121


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 260 SVLENEXVKEIQEQVLANLEKPNLPNVNV 346
           S+++ E + EI E+    +EKPN P++ V
Sbjct: 551 SIIDTERLLEIFEEKPTVVEKPNAPDLKV 579


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 413 DGTTFSPINMLXRILD 460
           DG TF+PI+   RILD
Sbjct: 245 DGQTFTPIDSASRILD 260


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 107  VLSFMFELVEKFYTYLFEDFLLEI 36
            +  F+   V   Y+Y FED+ LEI
Sbjct: 1809 IKDFLKHTVSYLYSYYFEDYELEI 1832


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,932,607
Number of Sequences: 5004
Number of extensions: 35328
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)