Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E16
         (513 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g61590.1 68416.m06898 F-box family protein contains weak hit ...    27   5.6  
At2g16950.1 68415.m01953 importin beta-2 subunit family protein ...    27   5.6  
At1g78970.2 68414.m09208 lupeol synthase (LUP1) / 2,3-oxidosqual...    27   5.6  
At1g78970.1 68414.m09207 lupeol synthase (LUP1) / 2,3-oxidosqual...    27   5.6  
At3g62110.1 68416.m06978 glycoside hydrolase family 28 protein /...    27   9.8  
At1g66960.1 68414.m07614 lupeol synthase, putative / 2,3-oxidosq...    27   9.8  

>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
           Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
           Pisum sativum, EMBL:AF004843
          Length = 411

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 52  SSNRYV*NFSTNSNIKLSTYWV*TGTTALSGYA 150
           SS R++ NFS NS  +   Y++ T T   SGYA
Sbjct: 75  SSRRFLCNFSNNSVSQRPWYFMFTTTDDPSGYA 107


>At2g16950.1 68415.m01953 importin beta-2 subunit family protein
           similar to SP|Q92973 Importin beta-2 subunit
           (Transportin) {Homo sapiens}; contains Pfam profile
           PF03810: Importin-beta N-terminal domain
          Length = 891

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 374 VCYDNPNSLYRFGDGTTFSPINM-LXRILDFFFHTKHASAXKL 499
           +C D P+ L     G    PIN+ L R+L FF  + HAS  KL
Sbjct: 159 ICEDIPHVLDTEVPGLAERPINIFLPRLLQFF-QSPHASLRKL 200


>At1g78970.2 68414.m09208 lupeol synthase (LUP1) /
           2,3-oxidosqualene-triterpenoid cyclase identical to
           lupeol synthase GI:1762150 from [Arabidopsis thaliana],
           2,3-oxidosqualene-triterpenoid cyclase [Arabidopsis
           thaliana] GI:2738027; contains Pfam profile PF00432:
           Prenyltransferase and squalene oxidase repeat; contains
           TIGRfam profile TIGR01787: squalene/oxidosqualene
           cyclases; identical to cDNA
           2,3-oxidosqualene-triterpenoid cyclase  GI:2738026
          Length = 757

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -2

Query: 503 KSVXLLM-HVLYEKRNQVFXSTY*LEKMLCHHQNGIENL--DCHSKHLSR 363
           K++ L M H+ YE  N  + +   +EK+LC     +EN   D   KHL+R
Sbjct: 345 KALQLTMKHIHYEDENSHYITIGCVEKVLCMLACWVENPNGDYFKKHLAR 394


>At1g78970.1 68414.m09207 lupeol synthase (LUP1) /
           2,3-oxidosqualene-triterpenoid cyclase identical to
           lupeol synthase GI:1762150 from [Arabidopsis thaliana],
           2,3-oxidosqualene-triterpenoid cyclase [Arabidopsis
           thaliana] GI:2738027; contains Pfam profile PF00432:
           Prenyltransferase and squalene oxidase repeat; contains
           TIGRfam profile TIGR01787: squalene/oxidosqualene
           cyclases; identical to cDNA
           2,3-oxidosqualene-triterpenoid cyclase  GI:2738026
          Length = 757

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -2

Query: 503 KSVXLLM-HVLYEKRNQVFXSTY*LEKMLCHHQNGIENL--DCHSKHLSR 363
           K++ L M H+ YE  N  + +   +EK+LC     +EN   D   KHL+R
Sbjct: 345 KALQLTMKHIHYEDENSHYITIGCVEKVLCMLACWVENPNGDYFKKHLAR 394


>At3g62110.1 68416.m06978 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase [Lycopersicon
           esculentum] GI:4325090; contains PF00295: Glycosyl
           hydrolases family 28
          Length = 471

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 302 VLANLEKPNLPNVNVPXKIIVCLDVCY 382
           +LA LE PN   V+      VC++ CY
Sbjct: 220 ILAPLESPNTDGVDPDSSTNVCIEDCY 246


>At1g66960.1 68414.m07614 lupeol synthase, putative /
           2,3-oxidosqualene-triterpenoid cyclase, putative similar
           to lupeol synthase GI:1762150 from [Arabidopsis
           thaliana], 2,3-oxidosqualene-triterpenoid cyclase
           [Arabidopsis thaliana] GI:2738027
          Length = 763

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 488 LMHVLYEKRNQVFXSTY*LEKMLCHHQNGIENLDCH--SKHLSR 363
           + H+ YE  N  + +   +EK LC     I+N D +   KHLSR
Sbjct: 354 MKHIHYEDENSHYITIGCIEKNLCMLACWIDNPDGNHFKKHLSR 397


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,511,896
Number of Sequences: 28952
Number of extensions: 164836
Number of successful extensions: 245
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)