Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E14
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21321-2|AAG00050.1|  489|Caenorhabditis elegans Cytochrome p450...    33   0.18 
AC084154-6|AAO91684.1|  319|Caenorhabditis elegans Serpentine re...    30   1.2  
Z48717-3|CAA88606.1|  520|Caenorhabditis elegans Hypothetical pr...    30   1.6  
AF016429-4|AAB65363.1|  881|Caenorhabditis elegans Patched relat...    30   1.6  
AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical...    29   2.9  
AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical...    29   2.9  
AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding p...    29   2.9  
AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding p...    29   2.9  
Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z95623-2|CAB09134.1|  509|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z48717-9|CAA88611.1|  509|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF039037-7|AAC48231.3|  441|Caenorhabditis elegans Nuclear hormo...    28   6.7  

>U21321-2|AAG00050.1|  489|Caenorhabditis elegans Cytochrome p450
           family protein 44A1 protein.
          Length = 489

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 16/88 (18%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
 Frame = +3

Query: 384 LWKMFSTPLYKKLVNSQIYLXKISTXILIXKINLFESDDSKN-DKSLLKTFLQQPQLDHK 560
           ++++FSTP ++K+V+ +         ++   ++  + +DS + D       + + +L+ +
Sbjct: 239 IFRLFSTPSWRKMVDLEDQFYSEVDRLMDDALDKLKVNDSDSKDMRFASYLINRKELNRR 298

Query: 561 DIMGMMVDILMAAIDTTAYTTSFVLYHI 644
           D+  +++ +    + TTA    + LY++
Sbjct: 299 DVKVILLSMFSDGLSTTAPMLIYNLYNL 326



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 177 FEDIPGPRSYPIIGTL 224
           F +IPGPR  P+IG +
Sbjct: 30  FSEIPGPREIPVIGNI 45


>AC084154-6|AAO91684.1|  319|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 64 protein.
          Length = 319

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
 Frame = +3

Query: 381 FLWKMFSTPLYKKLVNSQIYLXKISTXIL-IXKINLFESDDSKNDKSLLKTFLQQPQLDH 557
           F W MFS       +   I + K +T IL   +  L+ S+ +     +L    Q   +D+
Sbjct: 10  FYWPMFSLTCLCLFITLYILIYKFTTSILKTMRFFLYASNTATLISVVLAFATQTRNIDN 69

Query: 558 KDIMGMMVDILMAAIDTTAYTTSFVLY 638
           +  MG++ D     I  T   T + L+
Sbjct: 70  EHSMGLLCDGFYKYIGPTFCATCYSLW 96


>Z48717-3|CAA88606.1|  520|Caenorhabditis elegans Hypothetical
           protein T10B9.5 protein.
          Length = 520

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +3

Query: 486 FESDDSKNDKSLLKTFLQQPQLDHKDIMGMMVDILMAAIDTTAYTTSFVLYHIXRN 653
           F  D++KN  +  +       L   +I+G +   L+A  DTTA + S+  Y + R+
Sbjct: 290 FLEDETKNGFARSQIVKVDKHLTFDEIIGQLFVFLLAGYDTTALSLSYSSYLLARH 345


>AF016429-4|AAB65363.1|  881|Caenorhabditis elegans Patched related
            family protein 16 protein.
          Length = 881

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
 Frame = +3

Query: 210  IIGTLHK--YLPLIVIGVVAFNERFNSFALSEQDPESRSSKTIAAAFGSNSGVMKLDKGF 383
            ++G LH   +LP +++     +  F   ++  + PE     + A++F S +    L K  
Sbjct: 747  VLGLLHGIIFLPALLLTSGDLSRLFGGDSIQPEKPEKLGEISQASSFSSGNSETALVKSN 806

Query: 384  LWKMFSTPLYKKLVNSQIYLXKISTXILIXKINLFESDDSKNDKSLLK 527
              ++ + P  +    ++ +L K S      KINL     + N+K+LLK
Sbjct: 807  STELRTLPQERGSEKTKNFLNKNS-----QKINLQTFFGAANEKNLLK 849


>AL033514-34|CAA22113.1|  463|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35b protein.
          Length = 463

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 314 TLGILLAQSETIETFVKSYYTYDN 243
           TL  + A++E +E  +KSYY +DN
Sbjct: 91  TLNYINAENEAVEWDIKSYYDFDN 114


>AL033514-33|CAB54500.1|  480|Caenorhabditis elegans Hypothetical
           protein Y75B8A.35a protein.
          Length = 480

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 314 TLGILLAQSETIETFVKSYYTYDN 243
           TL  + A++E +E  +KSYY +DN
Sbjct: 108 TLNYINAENEAVEWDIKSYYDFDN 131


>AF160493-1|AAD43348.1|  465|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 465

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 314 TLGILLAQSETIETFVKSYYTYDN 243
           TL  + A++E +E  +KSYY +DN
Sbjct: 108 TLNYINAENEAVEWDIKSYYDFDN 131


>AF160492-1|AAD43347.1|  463|Caenorhabditis elegans DNA-binding
           protein ZIP-1 protein.
          Length = 463

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 314 TLGILLAQSETIETFVKSYYTYDN 243
           TL  + A++E +E  +KSYY +DN
Sbjct: 91  TLNYINAENEAVEWDIKSYYDFDN 114


>Z98851-3|CAB11538.2|  659|Caenorhabditis elegans Hypothetical
           protein H12I19.4 protein.
          Length = 659

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -2

Query: 227 MKRTNNGIASRSRYIFEIHEIICPVH*PYWHVHYPQNFQTLFCKHISSPGRE 72
           +++ NN IA   +Y+ +I+ I+ P      H  YP NF   F ++++   RE
Sbjct: 526 LEKMNNNIAFYEKYVQKIY-ILAP------HPLYPLNFMNSFLQYVTRKPRE 570


>Z95623-2|CAB09134.1|  509|Caenorhabditis elegans Hypothetical
           protein T10B9.4 protein.
          Length = 509

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 507 NDKSLLKTFLQQPQLDHKDIMGMMVDILMAAIDTTAYTTSFVLYHIXRN 653
           ND+    +     QL  ++I+      L+A  DTTA + S+V Y +  N
Sbjct: 291 NDEFHKSSSYNNRQLTTQEIISQCFVFLVAGFDTTAISLSYVTYFLALN 339


>Z48717-9|CAA88611.1|  509|Caenorhabditis elegans Hypothetical
           protein T10B9.4 protein.
          Length = 509

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +3

Query: 507 NDKSLLKTFLQQPQLDHKDIMGMMVDILMAAIDTTAYTTSFVLYHIXRN 653
           ND+    +     QL  ++I+      L+A  DTTA + S+V Y +  N
Sbjct: 291 NDEFHKSSSYNNRQLTTQEIISQCFVFLVAGFDTTAISLSYVTYFLALN 339


>AF039037-7|AAC48231.3|  441|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 204 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
 Frame = +3

Query: 411 YKKLV-NSQIYLXKISTXILIXKINLFESDDSKNDKSLL---KTFLQQPQLDHKDIMGMM 578
           +KKL  N + +L + ++ ++   +  + S ++K DK +    +TF+  P++  + +  + 
Sbjct: 266 FKKLSENDRFFLCRDTSLMVSNLMRAYFSVENKTDKFIRADGQTFVPPPKIPKEYMDNLS 325

Query: 579 VDILMAAIDT 608
            DI+M AI T
Sbjct: 326 SDIMMRAIKT 335


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,925,543
Number of Sequences: 27780
Number of extensions: 280719
Number of successful extensions: 693
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)