Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E12
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...    69   5e-13
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...    64   8e-12
SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces p...    27   1.5  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    26   2.7  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   3.5  

>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 68.5 bits (160), Expect = 5e-13
 Identities = 41/73 (56%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
 Frame = +3

Query: 135 YQYVKKPKKIPRLWSMQEQTPLAIQPA-RPAERSRLCYRKKTVKRVYGGVLCHKCVKQRI 311
           Y ++KK   IPR        PL   PA RP E +RL + KKTV+R YGG L    VK RI
Sbjct: 32  YLHIKKLGTIPRCGDTG--VPLQGIPALRPREFARLSHNKKTVQRAYGGCLSANAVKDRI 89

Query: 312 VRAFLIEEQKIVK 350
           VRAFLIEEQKIVK
Sbjct: 90  VRAFLIEEQKIVK 102



 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 18/27 (66%), Positives = 25/27 (92%)
 Frame = +2

Query: 41  MVQRLTFRRRLSYNTKSNQRRIVRTPG 121
           M QR+T+RRRL+YNT+SN+ RI++TPG
Sbjct: 1   MAQRVTYRRRLAYNTRSNRTRIIKTPG 27


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 64.5 bits (150), Expect = 8e-12
 Identities = 39/73 (53%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
 Frame = +3

Query: 135 YQYVKKPKKIPRLWSMQEQTPLAIQPA-RPAERSRLCYRKKTVKRVYGGVLCHKCVKQRI 311
           Y ++KK   IPR        PL   PA RP E +RL + +K V+R YGG L    VK RI
Sbjct: 32  YLHIKKLGTIPRCGDTG--VPLQGIPALRPREFARLSHNQKKVQRAYGGCLSANAVKDRI 89

Query: 312 VRAFLIEEQKIVK 350
           VRAFLIEEQKIVK
Sbjct: 90  VRAFLIEEQKIVK 102



 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 18/27 (66%), Positives = 25/27 (92%)
 Frame = +2

Query: 41  MVQRLTFRRRLSYNTKSNQRRIVRTPG 121
           M QR+T+RRRL+YNT+SN+ RI++TPG
Sbjct: 1   MAQRVTYRRRLAYNTRSNKTRIIKTPG 27


>SPAC3F10.13 |ucp6||UBA domain protein Ucp6|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 77  YNTKSNQRRIVRTPGWPLGLSVCQKAQEDPKAVVNAR 187
           YN  SN R  + +PGW  G   C     DP++V+  +
Sbjct: 150 YNHHSNHR--LASPGWWYGEDSCISQSLDPRSVMQVQ 184


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 418 LSXKIHFVAFFADLVLACCALRTFTIFCSS 329
           L   IH  A   +  L+CC   T  I+CSS
Sbjct: 9   LCKAIHLKAIIEEPKLSCCHCETCRIWCSS 38


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +1

Query: 67  TTVVQHKIKSKKNSKDTGLAAWFISMSKSPRRSQGCG 177
           TT++  +++ K+N ++    +W  S+++S  RS   G
Sbjct: 295 TTIIAEELRRKRNIQEMSETSWKPSIAESASRSDEKG 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,557,636
Number of Sequences: 5004
Number of extensions: 29062
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)