Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_E12
(488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155... 71 4e-13
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328... 71 4e-13
09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381... 70 9e-13
07_03_0687 - 20698778-20700029,20700815-20700819 30 1.1
09_06_0243 - 21813223-21813456,21814266-21814367,21814501-218147... 29 1.5
03_05_0489 - 24858483-24858637,24858811-24858921,24859013-248594... 28 3.5
03_05_0407 - 23906388-23906966,23907028-23907915,23908141-239087... 28 3.5
12_01_1067 - 11009508-11010071,11010122-11010679 28 4.6
10_02_0113 + 5410413-5410471,5411330-5413309,5413535-5413594,541... 27 8.1
>08_02_0790 -
21214282-21214369,21214455-21214564,21215478-21215557,
21215659-21215737
Length = 118
Score = 71.3 bits (167), Expect = 4e-13
Identities = 41/78 (52%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Frame = +3
Query: 123 GRLVYQYVKKPKKIPRLWSMQEQTPLAIQPARPAE--RSRLCYRKKTVKRVYGGVLCHKC 296
GRLVYQY KK P+ + + I RPAE RSRL ++TV R YGGVL
Sbjct: 28 GRLVYQYTKKRASGPKC-PVTGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTA 86
Query: 297 VKQRIVRAFLIEEQKIVK 350
V++RI+RAFL+EEQKIVK
Sbjct: 87 VRERIIRAFLVEEQKIVK 104
Score = 51.6 bits (118), Expect = 3e-07
Identities = 25/49 (51%), Positives = 31/49 (63%)
Frame = +2
Query: 41 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQEDPKAVVNAR 187
MVQRLT+R+R SY TKSNQ R+V+TPG L +K PK V +
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGK 49
>08_01_0372 +
3286861-3286939,3287220-3287299,3289041-3289150,
3289224-3289311
Length = 118
Score = 71.3 bits (167), Expect = 4e-13
Identities = 41/78 (52%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Frame = +3
Query: 123 GRLVYQYVKKPKKIPRLWSMQEQTPLAIQPARPAE--RSRLCYRKKTVKRVYGGVLCHKC 296
GRLVYQY KK P+ + + I RPAE RSRL ++TV R YGGVL
Sbjct: 28 GRLVYQYTKKRASGPKC-PVTGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTA 86
Query: 297 VKQRIVRAFLIEEQKIVK 350
V++RI+RAFL+EEQKIVK
Sbjct: 87 VRERIIRAFLVEEQKIVK 104
Score = 51.6 bits (118), Expect = 3e-07
Identities = 25/49 (51%), Positives = 31/49 (63%)
Frame = +2
Query: 41 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQEDPKAVVNAR 187
MVQRLT+R+R SY TKSNQ R+V+TPG L +K PK V +
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGK 49
>09_04_0106 -
14636773-14636863,14636948-14637057,14638107-14638186,
14638302-14638380
Length = 119
Score = 70.1 bits (164), Expect = 9e-13
Identities = 40/78 (51%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Frame = +3
Query: 123 GRLVYQYVKKPKKIPRLWSMQEQTPLAIQPARPAE--RSRLCYRKKTVKRVYGGVLCHKC 296
G+LVYQY KK P+ + + I RPAE RSRL ++TV R YGGVL
Sbjct: 28 GKLVYQYTKKRASGPKC-PVTGKKIQGIPHLRPAEYKRSRLSRNRRTVNRPYGGVLSGTA 86
Query: 297 VKQRIVRAFLIEEQKIVK 350
V++RI+RAFL+EEQKIVK
Sbjct: 87 VRERIIRAFLVEEQKIVK 104
Score = 52.0 bits (119), Expect = 2e-07
Identities = 25/49 (51%), Positives = 31/49 (63%)
Frame = +2
Query: 41 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQEDPKAVVNAR 187
MVQRLT+R+R SY TKSNQ R+V+TPG L +K PK V +
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGK 49
>07_03_0687 - 20698778-20700029,20700815-20700819
Length = 418
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 150 KPKKIPRLWSMQEQTPLAIQPAR 218
+PK +PR W M E+TP A P R
Sbjct: 52 RPKYLPRSWIMLEETPPAAAPFR 74
>09_06_0243 -
21813223-21813456,21814266-21814367,21814501-21814701,
21815591-21815716,21815791-21816072,21816218-21816388,
21816838-21816999,21817404-21817467,21818136-21818503
Length = 569
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 77 YNTKSNQRRIV--RTPGWPLGLSVCQKAQEDPKAVVNARA 190
YNTKS ++ + R PG +G+ VC D + +ARA
Sbjct: 75 YNTKSRRKELFQPRVPGGEVGMYVCGVTPYDDSHIGHARA 114
>03_05_0489 -
24858483-24858637,24858811-24858921,24859013-24859421,
24859746-24859800,24860042-24860318,24860442-24860562,
24860831-24861438,24861552-24861741
Length = 641
Score = 28.3 bits (60), Expect = 3.5
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 141 YVKKPKKIPRLWSMQEQTPLAIQPARPAERSRLCYRKK--TVKRVYGGVL 284
Y KK KKI LW +++ A Q R A+ C R+ TV R + VL
Sbjct: 395 YFKKWKKIMALWLRKQKMMEAAQSVRQADN---CLRRSLDTVSRTFNRVL 441
>03_05_0407 -
23906388-23906966,23907028-23907915,23908141-23908753,
23908858-23909021
Length = 747
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +3
Query: 39 KWC-SGLHSGDDCRTTQNQIKEE**GHRAGRLVYQYVKKPKKI 164
KW SG HS +DC+ + QI+ G++ + KKP K+
Sbjct: 577 KWYNSGAHSTNDCKVFRQQIQA---AIEGGKIKFDDSKKPMKV 616
>12_01_1067 - 11009508-11010071,11010122-11010679
Length = 373
Score = 27.9 bits (59), Expect = 4.6
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +3
Query: 111 GHRAGRLVYQYVKKPKKIPR---LWSMQEQTPLAIQPARPAERS 233
G +AG+L++ K+ P+ +W ++E+TP+ + P A S
Sbjct: 330 GIQAGQLMFPATKRQLPAPKTKKVWRVKEKTPIPVPPELGASSS 373
>10_02_0113 +
5410413-5410471,5411330-5413309,5413535-5413594,
5416037-5418047
Length = 1369
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 379 LVLACCALRTFTIFCSSIKKALTMRCLTHL 290
LVLA +L+ F F SSI+K T R L+ L
Sbjct: 37 LVLASFSLQVFLHFFSSIRKGNTSRLLSSL 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,238,601
Number of Sequences: 37544
Number of extensions: 198419
Number of successful extensions: 496
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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