Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_E12
(488 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L38941-1|AAC41916.1| 117|Homo sapiens ribosomal protein L34 pro... 69 7e-12
CR542242-1|CAG47038.1| 117|Homo sapiens RPL34 protein. 66 6e-11
CR542232-1|CAG47028.1| 117|Homo sapiens RPL34 protein. 66 6e-11
BC106009-1|AAI06010.1| 117|Homo sapiens ribosomal protein L34 p... 66 6e-11
BC070208-1|AAH70208.1| 117|Homo sapiens ribosomal protein L34 p... 66 6e-11
BC001773-1|AAH01773.1| 117|Homo sapiens ribosomal protein L34 p... 66 6e-11
AB061832-1|BAB79470.1| 117|Homo sapiens ribosomal protein L34 p... 66 6e-11
AB007181-1|BAA25840.1| 45|Homo sapiens ribosomal protein L34 p... 44 3e-04
BC037582-1|AAH37582.1| 349|Homo sapiens ATXN7L2 protein protein. 31 2.8
BC036849-1|AAH36849.1| 580|Homo sapiens ataxin 7-like 2 protein. 31 2.8
AL355145-2|CAI22938.1| 349|Homo sapiens ataxin 7-like 2 protein. 31 2.8
AL355145-1|CAI22937.1| 722|Homo sapiens ataxin 7-like 2 protein. 31 2.8
>L38941-1|AAC41916.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 69.3 bits (162), Expect = 7e-12
Identities = 40/79 (50%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Frame = +3
Query: 126 RLVYQYVKKPKKIPR-LWSMQEQTPLAIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVK 302
R+VY Y KK K P+ + ++P RP RL KK V R YGG +C KCV+
Sbjct: 29 RIVYLYTKKVGKAPKSACGVCPGKLRGVRPVRPKVLMRLSKTKKHVSRAYGGSMCAKCVR 88
Query: 303 QRIVRAFLIEEQK-IVKVL 356
RI RAFLIEEQK IVKVL
Sbjct: 89 DRIKRAFLIEEQKIIVKVL 107
Score = 49.6 bits (113), Expect = 6e-06
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = +2
Query: 41 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQEDPKA 172
MVQRLT+RRRLSYNT SN+ R+ RTPG + +K + PK+
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKS 44
>CR542242-1|CAG47038.1| 117|Homo sapiens RPL34 protein.
Length = 117
Score = 66.1 bits (154), Expect = 6e-11
Identities = 39/79 (49%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = +3
Query: 126 RLVYQYVKKPKKIPR-LWSMQEQTPLAIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVK 302
R+VY Y KK K P+ + ++ RP RL KK V R YGG +C KCV+
Sbjct: 29 RIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCVR 88
Query: 303 QRIVRAFLIEEQKI-VKVL 356
RI RAFLIEEQKI VKVL
Sbjct: 89 DRIKRAFLIEEQKIVVKVL 107
Score = 49.6 bits (113), Expect = 6e-06
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = +2
Query: 41 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQEDPKA 172
MVQRLT+RRRLSYNT SN+ R+ RTPG + +K + PK+
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKS 44
>CR542232-1|CAG47028.1| 117|Homo sapiens RPL34 protein.
Length = 117
Score = 66.1 bits (154), Expect = 6e-11
Identities = 39/79 (49%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = +3
Query: 126 RLVYQYVKKPKKIPR-LWSMQEQTPLAIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVK 302
R+VY Y KK K P+ + ++ RP RL KK V R YGG +C KCV+
Sbjct: 29 RIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCVR 88
Query: 303 QRIVRAFLIEEQKI-VKVL 356
RI RAFLIEEQKI VKVL
Sbjct: 89 DRIKRAFLIEEQKIVVKVL 107
Score = 49.6 bits (113), Expect = 6e-06
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = +2
Query: 41 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQEDPKA 172
MVQRLT+RRRLSYNT SN+ R+ RTPG + +K + PK+
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKS 44
>BC106009-1|AAI06010.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 66.1 bits (154), Expect = 6e-11
Identities = 39/79 (49%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = +3
Query: 126 RLVYQYVKKPKKIPR-LWSMQEQTPLAIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVK 302
R+VY Y KK K P+ + ++ RP RL KK V R YGG +C KCV+
Sbjct: 29 RIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCVR 88
Query: 303 QRIVRAFLIEEQKI-VKVL 356
RI RAFLIEEQKI VKVL
Sbjct: 89 DRIKRAFLIEEQKIVVKVL 107
Score = 49.6 bits (113), Expect = 6e-06
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = +2
Query: 41 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQEDPKA 172
MVQRLT+RRRLSYNT SN+ R+ RTPG + +K + PK+
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKS 44
>BC070208-1|AAH70208.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 66.1 bits (154), Expect = 6e-11
Identities = 39/79 (49%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = +3
Query: 126 RLVYQYVKKPKKIPR-LWSMQEQTPLAIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVK 302
R+VY Y KK K P+ + ++ RP RL KK V R YGG +C KCV+
Sbjct: 29 RIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCVR 88
Query: 303 QRIVRAFLIEEQKI-VKVL 356
RI RAFLIEEQKI VKVL
Sbjct: 89 DRIKRAFLIEEQKIVVKVL 107
Score = 49.6 bits (113), Expect = 6e-06
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = +2
Query: 41 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQEDPKA 172
MVQRLT+RRRLSYNT SN+ R+ RTPG + +K + PK+
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKS 44
>BC001773-1|AAH01773.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 66.1 bits (154), Expect = 6e-11
Identities = 39/79 (49%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = +3
Query: 126 RLVYQYVKKPKKIPR-LWSMQEQTPLAIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVK 302
R+VY Y KK K P+ + ++ RP RL KK V R YGG +C KCV+
Sbjct: 29 RIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCVR 88
Query: 303 QRIVRAFLIEEQKI-VKVL 356
RI RAFLIEEQKI VKVL
Sbjct: 89 DRIKRAFLIEEQKIVVKVL 107
Score = 49.6 bits (113), Expect = 6e-06
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = +2
Query: 41 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQEDPKA 172
MVQRLT+RRRLSYNT SN+ R+ RTPG + +K + PK+
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKS 44
>AB061832-1|BAB79470.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 66.1 bits (154), Expect = 6e-11
Identities = 39/79 (49%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = +3
Query: 126 RLVYQYVKKPKKIPR-LWSMQEQTPLAIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVK 302
R+VY Y KK K P+ + ++ RP RL KK V R YGG +C KCV+
Sbjct: 29 RIVYLYTKKVGKAPKSACGVCPGRLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCVR 88
Query: 303 QRIVRAFLIEEQKI-VKVL 356
RI RAFLIEEQKI VKVL
Sbjct: 89 DRIKRAFLIEEQKIVVKVL 107
Score = 49.6 bits (113), Expect = 6e-06
Identities = 24/44 (54%), Positives = 31/44 (70%)
Frame = +2
Query: 41 MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQEDPKA 172
MVQRLT+RRRLSYNT SN+ R+ RTPG + +K + PK+
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKS 44
>AB007181-1|BAA25840.1| 45|Homo sapiens ribosomal protein L34
protein.
Length = 45
Score = 44.0 bits (99), Expect = 3e-04
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = +2
Query: 50 RLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQEDPKA 172
RLT+RRRLSYNT SN+ R+ RTPG + +K + PK+
Sbjct: 1 RLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKS 41
>BC037582-1|AAH37582.1| 349|Homo sapiens ATXN7L2 protein protein.
Length = 349
Score = 30.7 bits (66), Expect = 2.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 400 FVAFFADLVLACCAL--RTFTIFCSSIKKALTMRCLTHLWQRTPP 272
F F + LV C + R FCS++ L TH+W++ PP
Sbjct: 40 FCTFGSRLVSPGCYVFSRRLDRFCSALSSMLERHLSTHMWKKIPP 84
>BC036849-1|AAH36849.1| 580|Homo sapiens ataxin 7-like 2 protein.
Length = 580
Score = 30.7 bits (66), Expect = 2.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 400 FVAFFADLVLACCAL--RTFTIFCSSIKKALTMRCLTHLWQRTPP 272
F F + LV C + R FCS++ L TH+W++ PP
Sbjct: 413 FCTFGSRLVSPGCYVFSRRLDRFCSALSSMLERHLSTHMWKKIPP 457
>AL355145-2|CAI22938.1| 349|Homo sapiens ataxin 7-like 2 protein.
Length = 349
Score = 30.7 bits (66), Expect = 2.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 400 FVAFFADLVLACCAL--RTFTIFCSSIKKALTMRCLTHLWQRTPP 272
F F + LV C + R FCS++ L TH+W++ PP
Sbjct: 40 FCTFGSRLVSPGCYVFSRRLDRFCSALSSMLERHLSTHMWKKIPP 84
>AL355145-1|CAI22937.1| 722|Homo sapiens ataxin 7-like 2 protein.
Length = 722
Score = 30.7 bits (66), Expect = 2.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -2
Query: 400 FVAFFADLVLACCAL--RTFTIFCSSIKKALTMRCLTHLWQRTPP 272
F F + LV C + R FCS++ L TH+W++ PP
Sbjct: 413 FCTFGSRLVSPGCYVFSRRLDRFCSALSSMLERHLSTHMWKKIPP 457
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,506,771
Number of Sequences: 237096
Number of extensions: 1209156
Number of successful extensions: 2445
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2437
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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