Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E12
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical...    66   1e-11
Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U97016-5|AAB52352.1|  196|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U49954-1|AAA93426.1|  388|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U41038-2|AAX88827.1|  635|Caenorhabditis elegans Serotonin/octop...    27   5.5  
U41038-1|AAK29709.2|  683|Caenorhabditis elegans Serotonin/octop...    27   5.5  
U14635-13|AAC46654.2|  322|Caenorhabditis elegans Hypothetical p...    27   5.5  
AF031415-1|AAC15778.1|  635|Caenorhabditis elegans serotonin rec...    27   5.5  
AF031414-1|AAC15827.1|  683|Caenorhabditis elegans serotonin rec...    27   5.5  
AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin re...    27   9.7  

>CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical
           protein C42C1.14 protein.
          Length = 110

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 37/75 (49%), Positives = 45/75 (60%)
 Frame = +3

Query: 123 GRLVYQYVKKPKKIPRLWSMQEQTPLAIQPARPAERSRLCYRKKTVKRVYGGVLCHKCVK 302
           GRLV QY+KK  +IP+      +    I PARP     L   ++TV R YGG L    VK
Sbjct: 28  GRLVVQYIKKRGQIPKCRDTGVKLH-GITPARPIALRLLKRNERTVTRAYGGCLSPNAVK 86

Query: 303 QRIVRAFLIEEQKIV 347
           +RI RAFL+EEQKIV
Sbjct: 87  ERITRAFLVEEQKIV 101



 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 22/43 (51%), Positives = 31/43 (72%)
 Frame = +2

Query: 41  MVQRLTFRRRLSYNTKSNQRRIVRTPGWPLGLSVCQKAQEDPK 169
           M  R+T+RRRLSYNT SN++R+V+TPG  L +   +K  + PK
Sbjct: 1   MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPK 43


>Z73426-5|CAO78745.1| 1607|Caenorhabditis elegans Hypothetical protein
            F40F11.2b protein.
          Length = 1607

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 110  RTPGWPLGLSVCQKAQEDPKAVVNARAN 193
            +TPG P+ LS  + + + P+AVV  R N
Sbjct: 1424 KTPGRPVALSTPRSSHKPPQAVVAPRPN 1451


>Z73426-4|CAA97793.3| 1593|Caenorhabditis elegans Hypothetical protein
            F40F11.2a protein.
          Length = 1593

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 110  RTPGWPLGLSVCQKAQEDPKAVVNARAN 193
            +TPG P+ LS  + + + P+AVV  R N
Sbjct: 1410 KTPGRPVALSTPRSSHKPPQAVVAPRPN 1437


>U97016-5|AAB52352.1|  196|Caenorhabditis elegans Hypothetical
           protein B0261.5 protein.
          Length = 196

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +1

Query: 1   GAFPXSPAVKKLENGAAAYIQATTVVQHKIKSKKNSKD 114
           G     P+  K +    + + +TT+ Q K  SK+ SKD
Sbjct: 24  GCLKKKPSQSKKKPSKVSTVTSTTISQEKTNSKRGSKD 61


>U49954-1|AAA93426.1|  388|Caenorhabditis elegans Hypothetical
           protein Y102E9.2 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 18/77 (23%), Positives = 31/77 (40%)
 Frame = +1

Query: 7   FPXSPAVKKLENGAAAYIQATTVVQHKIKSKKNSKDTGLAAWFISMSKSPRRSQGCGQCK 186
           +P +  +     G   Y++ T  VQ       +  D  L  W I+   +PRR+    Q  
Sbjct: 184 YPATSVIDSFFLGHTEYVK-TLAVQDNDSLWSSGGDKNLYNWSIAKCSAPRRTLDLSQFD 242

Query: 187 SKLRWLSSQLDLLNVPV 237
           + +R +S  L    + V
Sbjct: 243 APIRKISINLQHKKIAV 259


>U41038-2|AAX88827.1|  635|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 1, isoform b
           protein.
          Length = 635

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +1

Query: 76  VQHKIKSKKNSKDTGLAAWFISMSKSPRRSQGCGQCKSKLRWLSSQL-DLLNVPVFAT 246
           V HK ++   S     A  F +  + P RS  C  CK   + LSS + D++     +T
Sbjct: 552 VHHKSQTLLTSSTLNFAT-FSTCPQQPTRSYSCVDCKKAEKMLSSDVSDMMTTSTAST 608


>U41038-1|AAK29709.2|  683|Caenorhabditis elegans
           Serotonin/octopamine receptor familyprotein 1, isoform a
           protein.
          Length = 683

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +1

Query: 76  VQHKIKSKKNSKDTGLAAWFISMSKSPRRSQGCGQCKSKLRWLSSQL-DLLNVPVFAT 246
           V HK ++   S     A  F +  + P RS  C  CK   + LSS + D++     +T
Sbjct: 600 VHHKSQTLLTSSTLNFAT-FSTCPQQPTRSYSCVDCKKAEKMLSSDVSDMMTTSTAST 656


>U14635-13|AAC46654.2|  322|Caenorhabditis elegans Hypothetical
           protein C27H5.6 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 266 TFHCFLTVAKTGTFSRSSWLDSQ 198
           TFHC LTV +    +R SW  S+
Sbjct: 109 TFHCLLTVERVLAVNRVSWYRSR 131


>AF031415-1|AAC15778.1|  635|Caenorhabditis elegans serotonin
           receptor protein.
          Length = 635

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +1

Query: 76  VQHKIKSKKNSKDTGLAAWFISMSKSPRRSQGCGQCKSKLRWLSSQL-DLLNVPVFAT 246
           V HK ++   S     A  F +  + P RS  C  CK   + LSS + D++     +T
Sbjct: 552 VHHKSQTLLTSSTLNFAT-FSTCPQQPTRSYSCVDCKKAEKMLSSDVSDMMTTSTAST 608


>AF031414-1|AAC15827.1|  683|Caenorhabditis elegans serotonin
           receptor protein.
          Length = 683

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +1

Query: 76  VQHKIKSKKNSKDTGLAAWFISMSKSPRRSQGCGQCKSKLRWLSSQL-DLLNVPVFAT 246
           V HK ++   S     A  F +  + P RS  C  CK   + LSS + D++     +T
Sbjct: 600 VHHKSQTLLTSSTLNFAT-FSTCPQQPTRSYSCVDCKKAEKMLSSDVSDMMTTSTAST 656


>AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin
           related protein 2 protein.
          Length = 654

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 25  VKKLENGAAAYIQATTVVQHKIKSKKNSKDTGLAAWFISMSKSPRRSQGCG 177
           + +   G +++ QA  +  HK+K     K  G+       S+SP  ++GCG
Sbjct: 197 ILRTPRGLSSFEQANFLSMHKVK-----KVRGVEEVLFFFSESPMETEGCG 242


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,746,606
Number of Sequences: 27780
Number of extensions: 170948
Number of successful extensions: 478
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)