Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E12
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   1.3  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.3  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   4.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.0  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    21   9.3  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    21   9.3  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 77  YNTKSNQRRIVRTPGW 124
           Y  KSN+++I ++ GW
Sbjct: 204 YTDKSNEKKIPKSSGW 219


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 167 WDLLGLFDILINQAASPVSLLFFFD 93
           WDL  L  ++ N    PV++ FF D
Sbjct: 91  WDLCMLLLLVANLIILPVAISFFND 115


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 167 WDLLGLFDILINQAASPVSLLFFFD 93
           WDL  L  ++ N    PV++ FF D
Sbjct: 91  WDLCMLLLLVANLIILPVAISFFND 115


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 167 WDLLGLFDILINQAASPVSLLFFFD 93
           WDL  L  ++ N    PV++ FF D
Sbjct: 91  WDLCMLLLLVANLIILPVAISFFND 115


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 27  QKA*KWCSGLHSGDDC 74
           QKA   C G+  GD+C
Sbjct: 109 QKAISECKGIAKGDNC 124


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 126 RLVYQYVKKPKKI 164
           RLVYQ+V  PK I
Sbjct: 534 RLVYQFVDVPKDI 546


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 199 WLSSQLDLLNVPVFATVRK 255
           W S   D++NVP +    K
Sbjct: 196 WKSGTWDIINVPAYLNTYK 214


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 297 VKQRIVRAFLIEEQKIVKV 353
           + + I+R FLI +QK  K+
Sbjct: 73  ITRYIIRMFLISQQKTSKL 91


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 297 VKQRIVRAFLIEEQKIVKV 353
           + + I+R FLI +QK  K+
Sbjct: 56  ITRYIIRMFLISQQKTSKL 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,174
Number of Sequences: 438
Number of extensions: 1900
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)