Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E11
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    29   0.59 
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    29   0.59 
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    26   4.1  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   7.2  

>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = +3

Query: 204 LLSLKSVILWEQQWHPCAIVGSMTIMYLLIWLLDLNTLASIAIVGLILNFVDFMVPVICN 383
           L+  KS    E + H   ++ ++  +     L++ + +   AIV L+L  +D   PVIC 
Sbjct: 536 LIKRKSAFGTELRDHADELLQTLISLQNRFDLMNFDEMQMTAIVELLLTCLDICGPVICT 595

Query: 384 QLYGS 398
            L+ S
Sbjct: 596 NLFVS 600


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 135 STVQDQEQQVRKVKRTLXGWRVALLSLKSVILWEQ 239
           S +   E++++K +R+  GW + L  L+S  ++EQ
Sbjct: 24  SAIAATEKELQKAQRSQQGWNIGLFMLQSKDVYEQ 58


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = +3

Query: 180 TLXGWRVALLSLKSVILWEQQW-HPCAI----VGSMTIMYLLIWLLDLNTLASIAIVGLI 344
           T   W + L    ++   +Q+W HP  I    V +  I Y+L+W +   +L  +   G +
Sbjct: 333 TFAKWSIPLFLSSALEFAQQRWPHPFLIPSFFVIAPAIFYVLVWAIPGMSLEYLRETGWV 392

Query: 345 LNFVDFMVP 371
            +  +  VP
Sbjct: 393 FSSTETNVP 401


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 93  LTDDNFIAKMGEKSSTVQDQEQQVRKVKRTLXGWRV 200
           +T D  +   GEK STV+    +  K    L  WR+
Sbjct: 1   MTRDQRVCIFGEKKSTVRSVTFKAPKSNYDLTSWRI 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,912
Number of Sequences: 5004
Number of extensions: 51690
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)