Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E11
         (653 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0615 - 22761375-22761760,22762218-22765026                       31   1.1  
07_03_0702 + 20820796-20821495,20821569-20822119,20822254-20823018     30   1.4  
02_02_0367 + 9496893-9497022,9498262-9498442,9498519-9498660,949...    29   2.4  
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219...    29   4.3  
01_07_0095 + 41053562-41053603,41054609-41054846,41055064-410553...    28   7.5  
03_05_0503 - 24952770-24953846,24953961-24954641,24954730-249548...    27   9.9  
01_06_0088 + 26305326-26306372                                         27   9.9  

>06_03_0615 - 22761375-22761760,22762218-22765026
          Length = 1064

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/36 (38%), Positives = 26/36 (72%)
 Frame = +3

Query: 195 RVALLSLKSVILWEQQWHPCAIVGSMTIMYLLIWLL 302
           R AL ++K+VIL       CA++GS+T++ +++W+L
Sbjct: 700 RTALKTVKTVIL------VCAVLGSITLLLVVVWIL 729


>07_03_0702 + 20820796-20821495,20821569-20822119,20822254-20823018
          Length = 671

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +2

Query: 143 PRSGTASAKSKANFXRLACSLTLSEVCNIVGTTM 244
           P +GTA++  +  F   A S T++ +C+IVGT +
Sbjct: 493 PNAGTAASAGRFAFRAFAVSDTMAFLCSIVGTCL 526


>02_02_0367 +
           9496893-9497022,9498262-9498442,9498519-9498660,
           9498757-9498826,9498920-9499089
          Length = 230

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/43 (27%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = +3

Query: 222 VILWEQQWHPCAIVGSMTIMYLLIWLLDLN--TLASIAIVGLI 344
           V+LW+ +    A++G  T++++L  ++D +  TL S  ++G++
Sbjct: 47  VLLWKDKKISAAVIGGATVLWVLFEVVDYHFLTLISHVLIGVL 89


>06_03_0181 +
           17618888-17619125,17621503-17621683,17621765-17621906,
           17622002-17622071,17622162-17622307,17623382-17623948,
           17624558-17624641,17624723-17624797,17625049-17625217,
           17625395-17625586,17625662-17626053
          Length = 751

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +3

Query: 222 VILWEQQWHPCAIVGSMTIMYLLIWLLD--LNTLASIAIVGLI 344
           V+LW+ +     ++G  T++++L  +LD  L TL S  ++G +
Sbjct: 83  VLLWKDKKTSAVVIGGATVIWILFEVLDYHLLTLLSHVMIGAL 125


>01_07_0095 +
           41053562-41053603,41054609-41054846,41055064-41055312,
           41055419-41055469,41056044-41056256,41056305-41056367,
           41056422-41056474,41056953-41057067,41057150-41057404,
           41057531-41058618
          Length = 788

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 23/112 (20%), Positives = 48/112 (42%)
 Frame = +3

Query: 258 IVGSMTIMYLLIWLLDLNTLASIAIVGLILNFVDFMVPVICNQLYGSSSWTGQHEKTFEE 437
           +V +   +Y  I++ ++N +  +  V + + F D     +    YG +  T     TF  
Sbjct: 385 VVHTSRWIYGQIYIPEINWILMVLCVAVTVAFRDI---TLIGNAYGVACMTVMFVTTFLM 441

Query: 438 ICXSIVISYNKLVIYIHSFYSLRDTSPFMYYTISISTLCTVAWISSSINNIF 593
               I + + K +I+  SF+ L  +   +Y + S+  +    W+   +  IF
Sbjct: 442 ALIMIFV-WQKNIIFALSFFLLFGSVEVVYLSSSLMKVTQGGWVPLVLALIF 492


>03_05_0503 -
           24952770-24953846,24953961-24954641,24954730-24954882,
           24955041-24955043
          Length = 637

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 123 GEKSSTVQDQEQQVRKVKRTLXGWRVALLSLKSV 224
           G+ SSTV+  E  +  VKR++  WR   LSL+S+
Sbjct: 212 GKPSSTVE--ETMLPTVKRSILPWRKRKLSLRSL 243


>01_06_0088 + 26305326-26306372
          Length = 348

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +2

Query: 488 FILFP-TRYQPIYVLHYLHQYIVYCSLDIL 574
           F+ +P T + P+Y +H+L+   V+ +LD++
Sbjct: 142 FVAYPHTGWLPVYAVHFLYCVQVFLTLDLV 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,725,792
Number of Sequences: 37544
Number of extensions: 293195
Number of successful extensions: 726
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)