Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E11
         (653 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         26   0.90 
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   2.8  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    23   8.4  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 26.2 bits (55), Expect = 0.90
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 360  FMVPVICNQLYGSSSWTGQHEKTFEE 437
            F V  ICN L   S++ G +  TFEE
Sbjct: 1041 FYVAEICNHLSPKSTFPGSNYATFEE 1066


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 96  TDDNFIAKMGEKSSTVQDQEQQ 161
           TD+NF  + G K ++ Q Q+QQ
Sbjct: 464 TDENFSYRPGAKPNSGQQQQQQ 485


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 203 LTLSEVCNIVGTTMASLCHC 262
           + LSE+CN  G  +   C C
Sbjct: 475 MELSELCNFNGDYVCGQCQC 494


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 664,040
Number of Sequences: 2352
Number of extensions: 13957
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64814025
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)