Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_E11
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016420-8|AAB65305.1| 364|Caenorhabditis elegans Serpentine re... 32 0.41
Z93381-3|CAB07606.1| 362|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z29121-6|CAH19096.1| 405|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z29121-5|CAD54174.2| 403|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z22180-12|CAH19086.1| 405|Caenorhabditis elegans Hypothetical p... 29 2.9
Z22180-11|CAD54147.2| 403|Caenorhabditis elegans Hypothetical p... 29 2.9
Z79639-2|CAB01915.1| 367|Caenorhabditis elegans Hypothetical pr... 29 3.8
AF016439-4|AAV28339.1| 489|Caenorhabditis elegans Hypothetical ... 29 3.8
AF016439-3|AAB65899.2| 467|Caenorhabditis elegans Hypothetical ... 29 3.8
AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily a... 28 6.7
U51995-4|AAA96072.2| 317|Caenorhabditis elegans F-box a protein... 27 8.8
AL117200-9|CAB60586.1| 807|Caenorhabditis elegans Hypothetical ... 27 8.8
AC024847-6|AAF60855.1| 909|Caenorhabditis elegans Patched relat... 27 8.8
>AF016420-8|AAB65305.1| 364|Caenorhabditis elegans Serpentine
receptor, class r protein5 protein.
Length = 364
Score = 31.9 bits (69), Expect = 0.41
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 369 PVICNQ--LYGSSSWTGQHEKTFEEICXSIVISYNKLVIYIHSFYSLRDTS 515
P+ C + G+ W G H+ + SI++ YN + +F+SLR S
Sbjct: 245 PIACFNACVNGTYMWFGFHDFPMDSSISSIILKYNIFAVLFITFFSLRPAS 295
>Z93381-3|CAB07606.1| 362|Caenorhabditis elegans Hypothetical
protein F28G4.3 protein.
Length = 362
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +3
Query: 465 NKLVIYIHSFYSLRDTSPFMYYTISISTL 551
N+ +I IHSFY L T ++ Y+++++ L
Sbjct: 118 NQAMISIHSFYKLNPTGRYILYSLNLTEL 146
>Z29121-6|CAH19096.1| 405|Caenorhabditis elegans Hypothetical
protein ZK757.4b protein.
Length = 405
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/67 (28%), Positives = 37/67 (55%)
Frame = +3
Query: 366 VPVICNQLYGSSSWTGQHEKTFEEICXSIVISYNKLVIYIHSFYSLRDTSPFMYYTISIS 545
+PV+ L ++ W G + T+E +C + ++ + +IY+ FY+L ++YT +
Sbjct: 25 LPVVLVSL--ATGW-GIYAYTYE-LCILSIDNWPQRIIYLFIFYALL----ILFYTSYLR 76
Query: 546 TLCTVAW 566
T+ T AW
Sbjct: 77 TVYTKAW 83
>Z29121-5|CAD54174.2| 403|Caenorhabditis elegans Hypothetical
protein ZK757.4a protein.
Length = 403
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/67 (28%), Positives = 37/67 (55%)
Frame = +3
Query: 366 VPVICNQLYGSSSWTGQHEKTFEEICXSIVISYNKLVIYIHSFYSLRDTSPFMYYTISIS 545
+PV+ L ++ W G + T+E +C + ++ + +IY+ FY+L ++YT +
Sbjct: 23 LPVVLVSL--ATGW-GIYAYTYE-LCILSIDNWPQRIIYLFIFYALL----ILFYTSYLR 74
Query: 546 TLCTVAW 566
T+ T AW
Sbjct: 75 TVYTKAW 81
>Z22180-12|CAH19086.1| 405|Caenorhabditis elegans Hypothetical
protein ZK757.4b protein.
Length = 405
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/67 (28%), Positives = 37/67 (55%)
Frame = +3
Query: 366 VPVICNQLYGSSSWTGQHEKTFEEICXSIVISYNKLVIYIHSFYSLRDTSPFMYYTISIS 545
+PV+ L ++ W G + T+E +C + ++ + +IY+ FY+L ++YT +
Sbjct: 25 LPVVLVSL--ATGW-GIYAYTYE-LCILSIDNWPQRIIYLFIFYALL----ILFYTSYLR 76
Query: 546 TLCTVAW 566
T+ T AW
Sbjct: 77 TVYTKAW 83
>Z22180-11|CAD54147.2| 403|Caenorhabditis elegans Hypothetical
protein ZK757.4a protein.
Length = 403
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/67 (28%), Positives = 37/67 (55%)
Frame = +3
Query: 366 VPVICNQLYGSSSWTGQHEKTFEEICXSIVISYNKLVIYIHSFYSLRDTSPFMYYTISIS 545
+PV+ L ++ W G + T+E +C + ++ + +IY+ FY+L ++YT +
Sbjct: 23 LPVVLVSL--ATGW-GIYAYTYE-LCILSIDNWPQRIIYLFIFYALL----ILFYTSYLR 74
Query: 546 TLCTVAW 566
T+ T AW
Sbjct: 75 TVYTKAW 81
>Z79639-2|CAB01915.1| 367|Caenorhabditis elegans Hypothetical
protein F54E4.2 protein.
Length = 367
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = +3
Query: 228 LWEQQWH---PCAIVGSMTIMYLLIWLLDLNTLASIAI--VGLILNFVDFMVPVI 377
LW WH PC IV ++ MYLL+ + N + I + N VD + +
Sbjct: 134 LWRSPWHMVIPCFIVAIISNMYLLVAVKQENFQCILIIDEYSTLYNSVDVFISTL 188
>AF016439-4|AAV28339.1| 489|Caenorhabditis elegans Hypothetical
protein R02F11.3b protein.
Length = 489
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 309 NTLASIAIVGLILNFVDFMVPVICNQLYGSSSWTGQHEKTFEEICXSIVISYNKLVI 479
NT A +A + L +NF+ + V+ + L GS S + +I +VIS ++ +I
Sbjct: 189 NTAARMANITLAVNFLLMIAKVVASVLSGSMSIISSMVDSVVDITSGLVISLSERMI 245
>AF016439-3|AAB65899.2| 467|Caenorhabditis elegans Hypothetical
protein R02F11.3a protein.
Length = 467
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 309 NTLASIAIVGLILNFVDFMVPVICNQLYGSSSWTGQHEKTFEEICXSIVISYNKLVI 479
NT A +A + L +NF+ + V+ + L GS S + +I +VIS ++ +I
Sbjct: 167 NTAARMANITLAVNFLLMIAKVVASVLSGSMSIISSMVDSVVDITSGLVISLSERMI 223
>AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily
assigned gene nameprotein 63 protein.
Length = 604
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -2
Query: 439 ISSNVFSCCPVQELDP*SWLHITGTIKSTKLRMRPTIAIEARVLRSNNQMRRY 281
ISS+ S P++ P S T IKS R R + ++E V RS + RY
Sbjct: 209 ISSSHVSGIPLRRRSPFSSSKSTAPIKSRHYRSRFSESLEDNVFRSPERHSRY 261
>U51995-4|AAA96072.2| 317|Caenorhabditis elegans F-box a protein
protein 53 protein.
Length = 317
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 171 VKRTLXGWRVALLSLKSVILWEQQWHPCAIVGSM 272
V+R L +++ ++V++W H C IV S+
Sbjct: 107 VERALKDFKILSNHARNVVIWNMTEHGCGIVSSL 140
>AL117200-9|CAB60586.1| 807|Caenorhabditis elegans Hypothetical
protein Y50E8A.16 protein.
Length = 807
Score = 27.5 bits (58), Expect = 8.8
Identities = 23/98 (23%), Positives = 41/98 (41%)
Frame = +3
Query: 258 IVGSMTIMYLLIWLLDLNTLASIAIVGLILNFVDFMVPVICNQLYGSSSWTGQHEKTFEE 437
+ GS IM+ W L ++T + I+ L F +V + + + T +T EE
Sbjct: 359 LFGSAPIMFYYSWQLAISTFVTFPIILLTTKFYGLIVEKLSEK---ENDATAVSNETVEE 415
Query: 438 ICXSIVISYNKLVIYIHSFYSLRDTSPFMYYTISISTL 551
+ +I + I + RDT ++ IS T+
Sbjct: 416 VLSAIRTVRSFAAEKIENMRYTRDTD--AWFKISTKTV 451
>AC024847-6|AAF60855.1| 909|Caenorhabditis elegans Patched related
family protein 21 protein.
Length = 909
Score = 27.5 bits (58), Expect = 8.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 282 YLLIWLLDLNTLASIAIVGLILNFVDFMVPVICN 383
YL W LDL+ + A++ I VDF+ V C+
Sbjct: 741 YLCFWDLDLDPVTLCAVIVSIGMSVDFVAHVACH 774
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,262,676
Number of Sequences: 27780
Number of extensions: 283643
Number of successful extensions: 768
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -