Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E10
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    34   0.021
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    27   1.8  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   2.4  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    26   5.5  
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    25   7.2  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    25   7.2  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    25   9.5  

>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 33.9 bits (74), Expect = 0.021
 Identities = 37/147 (25%), Positives = 60/147 (40%), Gaps = 7/147 (4%)
 Frame = +2

Query: 161 LGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILT 340
           +GL  MG  +  N   KGFTV  Y+ +   ++    N      SI            +  
Sbjct: 12  IGLAVMGQNLILNGADKGFTVCCYNRTTSRVDEFLAN-EAKGKSIVGAHSLEEFVSKLKK 70

Query: 341 SNKVVLDVYLGK------DGVVAHAKKGSLLIDSSTID-PNVPKQIFPIALEKGLGFTDA 499
               +L V  GK      +G+    +KG +++D      P+  ++   +A +KG+ F  +
Sbjct: 71  PRVCILLVKAGKPVDYLIEGLAPLLEKGDIIVDGGNSHYPDTTRRCEELA-KKGILFVGS 129

Query: 500 PVSGGVMGAXNATLAFMAGGRKEDFER 580
            VSGG  GA     + M GG    + R
Sbjct: 130 GVSGGEEGARYGP-SLMPGGNPAAWPR 155


>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 131 SSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAA 265
           +S T+ NVA +G GN+GG +   +  KGF          + N  A
Sbjct: 3   ASRTNVNVAIVGTGNIGGELLNQI--KGFNENASTNGTTSFNVVA 45


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 585 KDLSKSSLRPPAMKARVAX*APMTPPDTGASVN 487
           K L+ SS+ PPA  A  +     TP + G S+N
Sbjct: 246 KALAFSSIEPPASSASTSPRNTPTPSNNGTSIN 278


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 120 DGRIVLTPTRMWLSSASETWEDSWLRTWLK 209
           +G+I+L   ++WL       E  W   WL+
Sbjct: 105 NGKILLIRPKIWLCDDGNFRESRWFTPWLR 134


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 357 STCTWAKMALWLMRKKDRF*SIRV 428
           S   W+ M+ WL++KKD+    R+
Sbjct: 34  SAIYWSCMSFWLLKKKDQIDKERI 57


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 329 KRPRRLHQRLQQWSWLASLRSWPL 258
           K+ +  H+R++  +WL+SL SW L
Sbjct: 186 KQTQETHERIR--NWLSSLNSWQL 207


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 171 ETWEDSWLRTWLKRV 215
           +TW D+ LRTWL  V
Sbjct: 188 DTWSDNELRTWLHDV 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,079
Number of Sequences: 5004
Number of extensions: 59949
Number of successful extensions: 171
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)