Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E08
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   131   6e-33
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   131   6e-33
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          24   1.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      24   1.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  131 bits (316), Expect = 6e-33
 Identities = 80/140 (57%), Positives = 93/140 (66%), Gaps = 5/140 (3%)
 Frame = +1

Query: 238 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 417
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 418 VRIPKEQGSPFILAW*LRQRHQVLPDPGAQLRL-----QGQVQAGVPRRR*QERRSSGVT 582
           VRIPKEQG  F+  W     + +   P   L         QV  G   +  Q  R   V 
Sbjct: 61  VRIPKEQG--FLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYF-VG 117

Query: 583 SLVIWPPGGAAGATSLCFVY 642
           +L     GGAAGATSLCFVY
Sbjct: 118 NLA---SGGAAGATSLCFVY 134



 Score = 85.8 bits (203), Expect = 3e-19
 Identities = 38/45 (84%), Positives = 39/45 (86%)
 Frame = +2

Query: 440 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKDAVL 574
           G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK    L
Sbjct: 68  GFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFL 112



 Score = 29.9 bits (64), Expect = 0.022
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +3

Query: 558 RKTQFWRYFAGNLASG 605
           + TQF RYF GNLASG
Sbjct: 107 KNTQFLRYFVGNLASG 122


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  131 bits (316), Expect = 6e-33
 Identities = 80/140 (57%), Positives = 93/140 (66%), Gaps = 5/140 (3%)
 Frame = +1

Query: 238 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 417
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 418 VRIPKEQGSPFILAW*LRQRHQVLPDPGAQLRL-----QGQVQAGVPRRR*QERRSSGVT 582
           VRIPKEQG  F+  W     + +   P   L         QV  G   +  Q  R   V 
Sbjct: 61  VRIPKEQG--FLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYF-VG 117

Query: 583 SLVIWPPGGAAGATSLCFVY 642
           +L     GGAAGATSLCFVY
Sbjct: 118 NLA---SGGAAGATSLCFVY 134



 Score = 85.8 bits (203), Expect = 3e-19
 Identities = 38/45 (84%), Positives = 39/45 (86%)
 Frame = +2

Query: 440 GLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKDAVL 574
           G LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK    L
Sbjct: 68  GFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFL 112



 Score = 29.9 bits (64), Expect = 0.022
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +3

Query: 558 RKTQFWRYFAGNLASG 605
           + TQF RYF GNLASG
Sbjct: 107 KNTQFLRYFVGNLASG 122


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 291 TASQEVLSERDRIGEVRHFVRLCDLQLGEYVEVG 190
           TA  + L ++ +I ++  +VR  DL   E+ +VG
Sbjct: 27  TADMDFLHKQKKIFDLLLYVRQADLSDAEWYDVG 60


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 291 TASQEVLSERDRIGEVRHFVRLCDLQLGEYVEVG 190
           TA  + L ++ +I ++  +VR  DL   E+ +VG
Sbjct: 27  TADMDFLHKQKKIFDLLLYVRQADLSDAEWYDVG 60


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -2

Query: 629 REVAPAAPPGGQITSEVTPELR 564
           ++++PA P G + +   TPE++
Sbjct: 272 KKLSPATPKGSKCSMITTPEIK 293


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 101 AALRNLLQTLPASKI 145
           AALR ++ TLP+ K+
Sbjct: 274 AALRKIIPTLPSDKL 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,348
Number of Sequences: 438
Number of extensions: 2832
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)