Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_E05
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    51   1e-07
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.1  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   5.5  
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    25   7.2  
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    25   7.2  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   7.2  
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo...    25   9.5  

>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +2

Query: 338 VDDLHFYPCTCGYQICRFRWNRIREGXNGLCP 433
           + D +F PC CGY++CRF W+ I+E  NG CP
Sbjct: 27  ISDKNFKPCQCGYRVCRFCWHHIKEDLNGRCP 58



 Score = 49.2 bits (112), Expect = 5e-07
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
 Frame = +3

Query: 435 ACRKAYPENPADFIPLSQEQVAAIX---TDXKAREXKRRXKTLESRRALANVRVVQNNLX 605
           ACR+ Y E    + P++ E+         + K RE +R+   L +R+ LAN+RVVQ NL 
Sbjct: 59  ACRRLYTEENVQWRPVTAEEWKMDLHRKNERKKREKERKEVELSNRKHLANIRVVQKNLA 118

Query: 606 FVVGLPVRLADPE 644
           +V GL  ++A+ E
Sbjct: 119 YVNGLSPKVANEE 131


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 349 PLLPVYMWIPNMSVSLESYSRRRXRPLPTLVGRHTQ 456
           P +P    +PN+S  L  YS R   P+P    R+ +
Sbjct: 40  PSIPRSTALPNLSNRLSPYSHRNYLPIPEADSRNLE 75


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -1

Query: 485 TERNEVCRVFWVCLPTSVGKGRXRLLEYDSSETDIFGIHMYTGRSGGRPLAKGS 324
           T RN     F   +P ++  G  R     +S TD+FG     G S G P +  S
Sbjct: 595 TSRNNSSSEFNAQIPMNLRNG-PRNASRSNSSTDLFGQSGIPGNSRGMPTSPNS 647


>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 333 GKWTTSTSTRVHVD 374
           G W +ST TR+HVD
Sbjct: 111 GAWFSSTKTRLHVD 124


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 458 KPGRLHSSQSRAGGSDKXGQXSPRAXTSXQDARVAACARERSRRTEQ 598
           +P + H+S+S +  S +    + RA  +    R A    ERSR T++
Sbjct: 14  RPEKRHASRSSSPRSFRPSNQNARANYNLPRVRDAMKEEERSRETKE 60


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 158 RTKTAIPSLEKKINPFQRTRKERSM 84
           RTK+A PSLE+   P+++T    S+
Sbjct: 257 RTKSATPSLEQFNEPYKQTLPSHSI 281


>SPAC6G10.07 |||nuclear cap-binding complex large subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
 Frame = +2

Query: 299 NRWNVHYVWNPW----QVDDLH 352
           + +N H+ WN W    ++DDLH
Sbjct: 450 SNFNFHWKWNEWIPDVELDDLH 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,145
Number of Sequences: 5004
Number of extensions: 43067
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)