Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP02_F_E05
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 44 1e-04
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 44 1e-04
02_04_0365 - 22384981-22385930,22386298-22386364,22386486-22386545 33 0.15
10_07_0130 + 13241085-13241151,13241268-13241339,13242458-132428... 29 3.2
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316... 29 3.2
08_02_1123 + 24474434-24474538,24474800-24474860,24475050-244754... 29 4.3
02_05_0910 - 32684836-32685259,32685911-32685987,32686179-32686421 29 4.3
01_01_0769 - 5944910-5946613,5946768-5946887,5948243-5948300,594... 29 4.3
12_01_0471 - 3672309-3672740,3673159-3673251,3673271-3673399,367... 28 5.6
09_06_0342 + 22410674-22411060,22412219-22412299,22412376-224125... 28 5.6
06_03_0969 - 26413534-26413594,26415020-26415318 28 7.5
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Frame = +3
Query: 435 ACRKAYPENP-ADFIPLSQEQVAAIXTDXKAREXKRRXK---TLESRRALANVRVVQNNL 602
ACR Y ++ V D K + K + K T+E+++ LA+VRV+Q NL
Sbjct: 57 ACRTRYDKDRIVKMAATCDRTVVEKNVDKKQKTQKVKSKAAVTVEAKKHLASVRVIQRNL 116
Query: 603 XFVVGLPVRLADPEILK 653
+++GLP L + IL+
Sbjct: 117 VYIIGLPANLCNESILE 133
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Frame = +2
Query: 338 VDDLHFYPCTCGYQICRFRWNRI-----REGXNGLCP 433
+ D PC CGY+IC + W+ I +E G CP
Sbjct: 20 ITDQQLKPCKCGYEICVWCWHHIIDMAEKEDTEGRCP 56
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Frame = +3
Query: 435 ACRKAYPENP-ADFIPLSQEQVAAIXTDXKAREXKRRXK---TLESRRALANVRVVQNNL 602
ACR Y ++ V D K + K + K T+E+++ LA+VRV+Q NL
Sbjct: 114 ACRTRYDKDRIVKMAATCDRTVVEKNVDKKQKTQKVKSKAAVTVEAKKHLASVRVIQRNL 173
Query: 603 XFVVGLPVRLADPEILK 653
+++GLP L + IL+
Sbjct: 174 VYIIGLPANLCNESILE 190
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Frame = +2
Query: 338 VDDLHFYPCTCGYQICRFRWNRI-----REGXNGLCP 433
+ D PC CGY+IC + W+ I +E G CP
Sbjct: 77 ITDQQLKPCKCGYEICVWCWHHIIDMAEKEDTEGRCP 113
>02_04_0365 - 22384981-22385930,22386298-22386364,22386486-22386545
Length = 358
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 344 DLHFYPCTCGYQICRFRWNRIREGXNGLCP 433
D F PC CG+ +C F RI E +G CP
Sbjct: 293 DSSFLPCPCGFHLCLFCHKRILEA-DGRCP 321
>10_07_0130 +
13241085-13241151,13241268-13241339,13242458-13242862,
13243057-13243112,13244116-13244274,13244379-13244498,
13244591-13245361,13245902-13246078,13246192-13246669,
13247502-13248094
Length = 965
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 407 REGXNGLCPRLSEGIPRKP-GRLHSSQSRAGGSDKXG 514
REG GL EG+PR+P G S++ R+ G++ G
Sbjct: 848 REGRRGLQHMEGEGVPREPGGGADSARRRSWGAEGWG 884
>03_06_0656 -
35330109-35331011,35331154-35331360,35331455-35331632,
35331726-35332221,35332889-35333033
Length = 642
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/74 (25%), Positives = 29/74 (39%)
Frame = +2
Query: 431 PRLSEGIPRKPGRLHSSQSRAGGSDKXGQXSPRAXTSXQDARVAACARERSRRTEQPXVR 610
P L+ IP P ++ S QS+A S Q P+A T + A +++ P
Sbjct: 542 PALTGTIPATPEKVQS-QSQASSSPAPAQAQPQAQTLSSSSSSGAAPAPAQAKSQAPPPA 600
Query: 611 RGPARQTRRPGDFK 652
A+ P K
Sbjct: 601 PAQAKSQAPPAQAK 614
>08_02_1123 +
24474434-24474538,24474800-24474860,24475050-24475477,
24475915-24476231,24476991-24477216,24477302-24477547,
24477635-24477745,24478051-24478182,24478297-24478325,
24478352-24478502
Length = 601
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +2
Query: 464 GRLHSSQSRAGGSDKXGQXSPRAXTSXQDARVAACARERSRRTEQPXVRRGPARQTRRPG 643
G+LHS+ + K PR Q+ AC + R P RRGP T +P
Sbjct: 30 GQLHSADVMSVKQGKNTAEGPRMNGLTQNRVFTACGYHQPPRRHLPWRRRGP---TPKPH 86
Query: 644 DF 649
+F
Sbjct: 87 NF 88
>02_05_0910 - 32684836-32685259,32685911-32685987,32686179-32686421
Length = 247
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 464 GRLHSSQSRAGGSDKXGQXSPRAXTSXQDARVAACARERSRRTEQPXVR 610
GR+ S GG+ + G+ PR T+ A VAA + + E P VR
Sbjct: 199 GRMRSVTGGRGGAGQLGRTEPRKNTAA--AAVAAAPKAAAAVAEPPVVR 245
>01_01_0769 -
5944910-5946613,5946768-5946887,5948243-5948300,
5948544-5948627,5949356-5949456,5949562-5949745,
5950746-5950774,5951134-5951226
Length = 790
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 576 NVRVVQNNLXFVVGLPVRLADPEILK 653
+VRV+Q L ++VG+P A ++L+
Sbjct: 80 SVRVIQRRLVYIVGMPSEFASDKVLR 105
>12_01_0471 -
3672309-3672740,3673159-3673251,3673271-3673399,
3673400-3673448,3674291-3674378,3674477-3674573,
3675195-3675278,3675377-3675464,3676589-3676715,
3676774-3676848,3676934-3677042,3677125-3677448,
3677863-3678039
Length = 623
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Frame = +3
Query: 192 VRLSIKKKLTLFHCYRQVGTIGSRV*DVSAESXWRXTG----GMSTMY--GTLGKWT 344
V+L++ KKL++ C+ + I +V VS +S W G +T+Y G++G+ T
Sbjct: 426 VQLNLPKKLSMPRCFLSIVVIEDKVSGVSFDSYWSPPNSDGTGENTVYRFGSVGQDT 482
>09_06_0342 +
22410674-22411060,22412219-22412299,22412376-22412579,
22412765-22412959,22413064-22413228,22413501-22413761,
22413908-22414126,22414285-22414504,22414591-22414613,
22414728-22414766
Length = 597
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 477 PLSQEQVAAIXTDXKAREXKRRXKTLESRRALANVRVV 590
PL Q+Q + +ARE K R K E +R R++
Sbjct: 35 PLQQQQQVGLGRRGRAREEKERTKLRERQRRAITARIL 72
>06_03_0969 - 26413534-26413594,26415020-26415318
Length = 119
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +2
Query: 440 SEGIPRKPGRLHSSQSRAGG---SDKXGQXSPRAXTSXQDARVAACARERSRRTEQPXVR 610
++G P R S +RA S Q SP A + + +R R + P +
Sbjct: 26 AQGSPAAAARRRSRAARATARWRSRAAAQGSPAA-AARRRSRGTQARRPPAAARRPPAMA 84
Query: 611 RGPARQTRRP 640
RGP Q RRP
Sbjct: 85 RGPQAQARRP 94
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Frame = +2
Query: 497 GSDKXGQXSPRAXTSXQDARVAACARERSRRTEQ--PXV---RRGPARQTRRP 640
G D+ Q SP A + A AR RSR Q P RR Q RRP
Sbjct: 21 GGDEAAQGSPAAAARRRSRAARATARWRSRAAAQGSPAAAARRRSRGTQARRP 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,005,842
Number of Sequences: 37544
Number of extensions: 308683
Number of successful extensions: 916
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -